RNA id: XM_043235415.1


Basic Information

Item Value
RNA id XM_043235415.1
length 611
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122341789
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25844687 ~ 25845748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGTTTTAAACAGGTTTCTACAGCAGCACCAAGGTAGATTTaactctgtgtgttttgttgtttgtaccATCTGACACAGTAATTCTGTGAGGTTTCTAGCAGATCACTGAGAGATCAGAGGATGACGGTTCAAGTGTACTGCTTGCTGACTGctgttttgtgtctgtctgtgtatttgAGCACAACAGATGCTGCTCAAAGTCAAACAGTAAAACCAGGAGCGTGTCCACCTGAGAATCTTGTAGGAGGGTTATGTACCAAGACCTGTGCTGTTGATGCCAAGTGTCCGGGCACTGACAAGTGCTGCAGCAATGGATGTGGACGTCACTGTATGCCTCCCTATATAGTGAAGCCAGGTCGGTGTCCCAAACCAGAGAAGGTTTCACCAAGTGTCCAAGGCTGTACCTATGATGGTCAGTGTGCTTCCACACTGAAGTGTTGCCCAGCCAGCAGTGCCCAAGCATGTGCCGAACCGCATGGACATGGGAAGGGAAGGGACAAGAAAATGACTGAACTGTTTCAAAGGCCTGATTGCTTCTGTGGTGACAAAATAAATGGCTCTGTACAACTCTGGTTGTGGTTGATTTGCGTTTAGGCCATGTATTCTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34456 lncRNA upstream 4010 25837143 ~ 25840677 (+) False G23146
TU34469 lncRNA upstream 9546 25834383 ~ 25835141 (+) True G23151
TU34467 lncRNA upstream 10574 25832548 ~ 25834113 (+) True LOC122341783
TU34465 lncRNA upstream 14243 25828964 ~ 25830444 (+) True G23149
TU34439 lncRNA upstream 57664 25779416 ~ 25787023 (+) True G23142
TU34470 lncRNA downstream 1361 25847109 ~ 25853243 (+) True G23152
TU34453 lncRNA downstream 4153 25849901 ~ 25850576 (+) False G23146
TU34489 lncRNA downstream 28566 25874314 ~ 25877151 (+) True G23160
TU34506 lncRNA downstream 101338 25947086 ~ 25947832 (+) True G23170
TU34496 lncRNA downstream 104785 25950533 ~ 25952383 (+) False LOC122341778
XM_043230326.1 mRNA upstream 4086 25837187 ~ 25840601 (+) False LOC122332877
XM_043230335.1 mRNA upstream 6380 25837186 ~ 25838307 (+) True LOC122332877
XM_043235398.1 mRNA upstream 10489 25832505 ~ 25834198 (+) False LOC122341783
XM_043235543.1 mRNA upstream 121941 25720847 ~ 25722746 (+) True LOC122341871
XM_043233716.1 mRNA upstream 145582 25696871 ~ 25699105 (+) True LOC122336602
XM_043235956.1 mRNA downstream 3810 25849558 ~ 25850619 (+) True LOC122342152
XM_043235905.1 mRNA downstream 11125 25856873 ~ 25871422 (+) True LOC122342114
XM_043234716.1 mRNA downstream 48842 25894590 ~ 25911625 (+) True LOC122341383
XM_043235389.1 mRNA downstream 102306 25948054 ~ 25952747 (+) True LOC122341778
XM_043235390.1 mRNA downstream 113765 25959513 ~ 25963209 (+) True noxo1a
TU34447 other upstream 4087 25837143 ~ 25840600 (+) False G23146
TU34451 other upstream 4087 25837143 ~ 25840600 (+) False G23146
unassigned_transcript_296 other upstream 137540 25706651 ~ 25707147 (+) True LOC122341380
unassigned_transcript_295 other upstream 138469 25704655 ~ 25706218 (+) True LOC122341888
TU34365 other upstream 182370 25661048 ~ 25662317 (+) True G23121
TU34448 other downstream 3743 25849491 ~ 25850576 (+) False G23146
TU34498 other downstream 48909 25894657 ~ 25906335 (+) False LOC122341383
TU34502 other downstream 61417 25907165 ~ 25909176 (+) False LOC122341383
XR_006250491.1 other downstream 815492 26661240 ~ 26704452 (+) False pitpnc1a
TU35285 other downstream 913346 26759094 ~ 26772903 (+) False ubald2

Expression Profile