RNA id: XM_043235442.1


Basic Information

Item Value
RNA id XM_043235442.1
length 2532
RNA type mRNA
GC content 0.49
exon number 2
gene id hoxb1a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22779834 ~ 22783095 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGTCGAGCAGCTCGTGGTGCACGCGAACTCATTAGTTTGACTCACAGTCCTAAAGTTTGCTTTATTTAGTTGGCTTTCGAACGAAAGCTGCAAACTTTGAAGACCGTCTCTCTCACTTCGACATCCAGTTGGATccgataattaaaaaaaagctaaggggaaaaaaatcaagcGTTCCGCGCAGCGCATGTTTCCAGAGGCTGTAAGAGAAAAACAAACGCGTTCTTTTCCTGCTCGTTTGGACTCAACAGAAGGCTCGCTGTCGACCTAATTTCGTTTCGGTAACGGATCAGTTCAGTGATTTAATTAGACGGGTCCGAAGCCAGCCCGGACCGATCTGTGAACCGTGGCGTCACTTCCAATTCGAGTGTTAAAGAGATTTCCTTCCTGAACGCACATAATGAACTCTGCGTCGGGCTGCTCTTACAGGCGACGCAGAACATTGCTCTTATTGAAGCGGACAATCACCTAGGCCTAACTCGGGCCGTTCCGGCATACGAAGATAACGCATTATTTACTAAACCAGAACCTAAACGGTAGAGATGAGAAGGAGACGAAGACCGAGATCTCAATGCAAAAGTCTAAAAcgttctttctttatttctctttctctcattcgGAGAGCCTTTCACGCAGGGTTTGACATATTCTAGCTGTTATCAGATTGATGGGCTGGTTTGATTGAAGTGGCTTTGTCATGCAAATGTCAAGCGCGTGATGGATGGTCGCCGTGCGCTGACAAACTTCTGGAGGTCCCCTCACCATTGGCGCCGTGACGTCTCACGTGACCAGCAGCTGAGGTAAAGATGTGTTATAGGGAAGCCCGAGCAAATACTCCAGAGGTAAGCGTTTCCCCCCTTTCCGCATGACATACTGTTGCGAGCTTGCAGGACAGGAGGCTCTCCCGATCTCTCAGGTTGACCCTCCGCCATTAATTGCGCATGGACAATTCCAGAATGAACTCTTTTTTGGAGTACACAATTTGTAACCGTGGGACGAACGCCTACTCGCCCAAGGCTGGATACCACCACTTGGATCAGGCGTTCTCGGGCCCCTTCCACACCGGACACGCAAGTGACAGCTATAACGCTGATGGACGACTTTACGTAGGGGGGAGCAACcagccagcagcagcagcagcacaacATCAGCACCAGAGCGGCGTCTACGCGCATCACCAGCACCCAACTCATCAGACTGGCATTGGCCTTTCGTACGGTGGCACGGGGACTGCGAGTTATGGGAGCCAGGCCTGCGCCAATCCGGACTTCGCTCAACACCAGTATTTCATTAACCCCGAGCAGGATGGGATGTATTATCACTCATCGGGCTTTTCAAACTCGAACGTCGGCCCTCACTATGGCTCCATGGCCGGTGCGTACTGCGGTGCGCAGGGAGCCGTTCCGGCAGCACCTTACCAGCATCACGGATGCGAAGGCCAGGATCACCAGCGAGGCTACTCACAGGGCACCTACGCCGACTTATCGGCCTCCCAAGAGGGGGAAAGGGACACGGATCAGTCGCCACCTGGGAAGACATTCGATTGGATGAAAGTCAAAAGGAACCCTCCTAAAACAGCTAAAGCGGCCGATTACGGACTGGGACCACAAAACACCATCCGGACGAATTTCACAACCAAACAACTGACGGAGCTCGAGAAAGAGTTTCACTTCAGCAAGTATCTGACGCGAGCGCGCCGGGTCGAAATCGCCGCCACGCTCGAGCTGAACGAGACGCAGGTGAAGATCTGGTTTCAGAACCGCCGAATGAAGCAGAAGAAGCGAGAAAAGGAGGGACTGGCGCCCGCTTCGTCCACCTCGTCGAAAGACCTCGAGGATCACTCTGACCACTCGACCTCAACCTCTCCAGGAGCTTCTCCGAGCCCTGACTCCTAACCGAGGACATCGACTCCGGGGGCAGAGAACAGCAGATTCGAAATATATCGCAAAGTCTATTAATTTAAGCATTCCACTGTGTGCCCGAAAGATCTTCTCGTGTTTTGTGTATGATGGACAAAATCGAACTTTAGGCTAAAAAGCGAAGAGCAAAGAGGCTTTTAGCACAACAATGAACATAGTCACACCGTCTCCTCGAACAAGCgttccgatttttttttttttttttggaaacgtTTGTGCGCGTTATACAGGGTATttctaaatgataaatataatgcaCTTTCATAATGTTTACACGTCTCTAAACGAACCTAACCGACTTTACAGGGAGCCTGTCGTGTTgtcaaaatatatgtattgatgtttttttgttgcgtTTATGAAATTGTACGCATTTAATATTTGAGTTTTGAGGATTGTAGCTATAGGAGTTTGGACTCCTTGCACTATGCGTTTGCGGAGTAGGCCTTTACTGAGCACCAGCACAATTTAGTGGGAAAATGCGAACGATTCCTTCTCAGTGTGCATTGtgatgtttcatttcatttttcaattgAAAGCGATTGAATTCGAATCTTGGGAAAGTTCCATTCCGTTTGTAGAACAAAAAGGCAATGCAGggtgtttaaaa

Function

GO:

id name namespace
GO:0021561 facial nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021570 rhombomere 4 development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09301 HOX_1; homeobox protein HoxA/B/D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33399 lncRNA upstream 13704 22765746 ~ 22766130 (+) False hoxb2a
TU33382 lncRNA upstream 53946 22724044 ~ 22725888 (+) False hoxb5a
TU33156 lncRNA upstream 106923 22598018 ~ 22672911 (+) False G22340
TU33157 lncRNA upstream 139472 22511428 ~ 22640362 (+) True G22340
TU33113 lncRNA upstream 443613 22288141 ~ 22336221 (+) False hdac5
TU33447 lncRNA downstream 116238 22899333 ~ 22903541 (+) False LOC122341356
TU33448 lncRNA downstream 116238 22899333 ~ 22901102 (+) False LOC122341356
TU33452 lncRNA downstream 122647 22905742 ~ 22906695 (+) False LOC122341356
TU33443 lncRNA downstream 157152 22940247 ~ 23028505 (+) True G22554
TU33498 lncRNA downstream 306378 23089473 ~ 23095422 (+) True G22581
XM_043230271.1 mRNA upstream 9232 22765647 ~ 22770602 (+) True hoxb2a
XM_043230245.1 mRNA upstream 14298 22747210 ~ 22765536 (+) False hoxb3a
XM_043234705.1 mRNA downstream 116247 22899342 ~ 22908135 (+) True LOC122341356
XM_043235957.1 mRNA downstream 129471 22912566 ~ 22918961 (+) True LOC122342153
XM_043235458.1 mRNA downstream 301051 23084146 ~ 23090936 (+) True cbx1a
XM_043235459.1 mRNA downstream 320662 23103757 ~ 23114098 (+) True copz2
XM_043231035.1 mRNA downstream 345689 23128784 ~ 23135038 (+) True LOC122333434
TU33136 other upstream 232626 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 249774 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 753923 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 803169 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 1045707 21637743 ~ 21734127 (+) False crhr1
TU33451 other downstream 122282 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 375154 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 620346 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 1053004 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 1267144 24050239 ~ 24051863 (+) False LOC122342055

Expression Profile