RNA id: XM_043235447.1


Basic Information

Item Value
RNA id XM_043235447.1
length 3768
RNA type mRNA
GC content 0.47
exon number 19
gene id cdc27
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21783456 ~ 21795403 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGATAACGGTTGGAATGTTCAAATCTTCGATGCTAGTTTTGCTACTTCTGGCCTGGAGTGGATACTGAGCTAAGAAAGCGACTGAAGAAGGAgcaaagaaaccaaaaaaggAGGTGAAGAGGAGCCTGGCTACGGAATGACGGTGTTGCAGGAACCTGTCCAGGCTGCTGTCTGGCATGCTCTGAACCACTACGCCTACCGAGATGCAGTATTCCTGGCAGAGAGACTCTATGCTGAGGTCCATTCAGAAGAAGCGCTGTTTCTGCTGGCTACGTGCTACTACCGTTCAGGGAAGGCTTATAAGGCCTACCACCTCCTGAAAGGACACAGCTGCACCACCCCACAATGCAAATACCTCCTCGCCAAGTGCTGTGTGGAACTGAGCAAATTGGCAGAGGGAGAGCAGATCATGACCGGAGGGGTCCTGAACAAACAGAAGAGCCAAGACGACATTATTACTGAGTTTGGCGACTCGGCCTGCTTTACTCTGGCACTGCTGGGGCAAATCTACTGCAAAACGGATCGGATAGCAAAAGGAGCTGAATGTTACCAAAAAAGCATGAGCGAGAACCCTTTCTTATGGTCTCCATTTGAGTCTCTGTGTCAAATCGGGGAGCGACCGGATCCAGAGCAGATATTTAGATTGACCTCCTTGCAGAATTTCAGTGGAGGCAGCGGAGGAGTCGTCCCCCCTCCTCCCATCAGCCCCGCACACACACCTAGTAACAACATGGGACACAGACAAGTTGACACCGTCCTAATGGAAACCCCACAGGACACTTTGGAGCTGAACCGGCTCAATCTAGAGTCTTCGAACTCAAAATACTCCCTAAATACGGACTCTTCTGTGTCCTACATCGACTCCTCTGTCATCTCGCCCGACTCTGTGCCACTGGGCACCGGTGGCTCACTATTGTCCAAACAAGTgcaaaacaaacccaaaagcGGCCGATGTCTGCTGGGGGGCACGGCCACACTTAGCCCTCTCACACCAAGTTTTGGAATTTTGCCCCTTGAGCCGAGCCCGGGTGACCCAACATACCTACAGAATTACAGTCACAGTGGAAGTGGGATGGAACCTCCTCCTCCGCCTGGTCCTCCGAAGAAGGCCGTCAGTAGAATCAGCCAAGTGGGAACGAAATCAGTGTTTGCACAGAGTGGAAACAGCAGAGAGGTCATTCCAAACCCTTTCAACCAAACTCAGACCACTGCCCCACAGACCAGTACTACACCGCAAGTGCTGAGCCCAACCATTGCTGCTCCCCCAAACGTGCAGCCGCGGCGGAGCTCAAGACTCTTCACCAGTGCCAGCTCCACTGCCAAGGAAAACAGTAAGAAGCTGAAAATGAAGTTCCCCACCAAGATTCCCAATCGAAAGACCAAAACGAAAACGGGTAAGGGAGGAATCACCCCATCTAACCTGAATGAGAGCATCGAGATCCTCAAGCTTGATTCTTCTATATCGGAAGGAAAAGGCAACATCAGCTCACCACAGTTCCAGGCTTTTAATCTACAAAAGGCTGCTGCGGATGGGCTGATGACGTTGATGCGGGATATTGGGAGGGGCTATCTTGCTCTCTGTTCTTACAACTGCAGAGAAGCCATTAACATCTTGAGTCAGCTGCCTTCACACCACTACAACACAGGATGGGTGCTGGGACAGATCGGACGTGCTCACTTTGAGTTGGCTGAATACATGCAGGCGGAGAGGATATTCTCGGAGGTCCGGCGTATAGAGAGCTATCGAGTGGAAGGTATGGAGATCTATTCTACAACACTCTGGCATTTACAGAAGGATGTGGCACTTTCCGCCCTATCTAAAGATCTCACCGACATGGACAAAAACTCACCAGAGCCCTGGTGTGTAGCTGGTAACTGTTTCAGCTTACAGCGGGAACACGACATAGCCATTAAGTTCTTTACAAGGGCCATCCAGGTGGACCCCAGCTTTGCGTACGCATACACCCTATTAGGGCATGAACTAGTTCTCACAGAAGAGCTGGAGAAAGCCCTGGGCTGCTTCCGCAATGCTATACGCCTCAATAAACGTCACTACAATGCCTGGTACGGCTTGGGAATGATTTACTACAAGCAGGAAAAATTTAACCTAGCCGAGATTCATTTCAAGAAGGCTTTGAGCATCAATCCTCAGAGCTCTGTGCTGCTTTGTCATATTGGAGTGGTTCAACATGCTTTGAAAAAATCAGACCATGCACTGGAGACCCTCAACAGAGCCATTAGCATCGACCCCAAGAACCCGCTATGCAAATTCCATAGGGCCTCTATTCTCTTTGCCAATGAAAAGTATAAGGCGGCTTTGCAGGAGCTTGAAGAGCTGAAACAAATAGTGCCCAAAGAGTCCCTTGTTTACTTCTTAATAGGAAAGGTCTATAAGAAGCTTGGCCAGACTCATCTGGCACTAATGAACTTTTCTTGGGCCATGGACTTGGACCCTAAAGGGGCCAATAATCAGATCAAAGAGGCCATAGATAAGCGATACCTCCCAGATGATGACGAACCCGTCACGCCTGATGACTATCCCTACTACTCAACTGAGGTGGAGGAGTCACAGGAGAGCAGTATGACAGACGCTGATGACACGCAGCTCCACACCACGGAGAGCGATGAGGTTCTGTAGCCCCCGACACCACTCTGGACTTTGAAACAATGCCAATCTAGGGGCTACTTGAAGACTTCAGCTCTGAAAaaggaggaagaagaaaaaaaggaaaacaaactgCTGCTAATAACAGTACCTCCTCATTTCTGTCGTTTTATTTTCGTCATTCGTTCTTGCCTTTTTCCACCCCCTCGTCATCATGCCTTAGAGGTCTCTCATCGGTCTGATCTTCTGGTCCTGTCTCATCCCTCATCGTACCTGGCAGGCATCCCTAACTGCAGACAGAACTCAAGTTCTGCCTGAGCCCAGATTTGCCAATGACCCCACTGTCTTCTCAGCAAGTTAATTGTCAGTTGAAGACTCAAAACAGGGCCACAGACGTTCATGGATGTTCCTGTCTTAATGCTTAGgccttttatgttattttatcgGCATTTACTTTGAATAAAGACCTGTGTAAGAGTTGGTAGTCCTTTGATTCCTCTCCCCTCCCTTTTTCATCGTGGAACGTAATTGCTGGGAGAAAAAAAGCACTTTCTGCCCACATCAAAAAAGCGTTTGGCAGTAGAGATTCAATGTAAACTGCATATCTTCTATCAGATTACCATCTGTTTAGAAGAACAGTGTTTTTGAGAGTTAACTAGTTCTGGATGAAGCAgatctttttccattttgaaacTTGTGTGTGACTGATGCTTAAGCacttatgtttaaaaaaaaaaaattgtcttaatCTGAAGAATTCGACACTCGCTCTCATCTGTTCAGTTCTTATCTACCTTCAAAACATCCATGTGTTTTGCCCAGCTGCAAGACATTGATTAGATTTAATGATAAGCGTATAGGTGGGGTGGTTTCCTTGACACACTTTCATCTGTGTTTAGGACACCAGACCATGATGTCCAAATTAACAACACTATTGTATGGCACAGTGACCAGTGGTCAGACTACTTGAGacaattttctgaaatgttggTGCTGTTGAGGACAATACTGATGAACATAGAAAATGTGCACAAAGTATCTTTCATGGATTTTATTTTACCAGaacatgtttattataaaatgtttttgatctcTGCTAAATGCTtcttattgtacattttaaggaATTAAAAGGTAATAGAATAAACAACTTTGACTGAAA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32959 lncRNA upstream 49034 21734138 ~ 21734422 (+) True G22201
TU32956 lncRNA upstream 146886 21636123 ~ 21636570 (+) True G22198
TU32955 lncRNA upstream 147377 21635744 ~ 21636079 (+) True G22197
TU32816 lncRNA upstream 289958 21345129 ~ 21493498 (+) True G22094
TU33101 lncRNA downstream 182215 21977618 ~ 21979015 (+) False wnk4b
XR_006250495.1 lncRNA downstream 240479 22035882 ~ 22089931 (+) True LOC122341843
TU33104 lncRNA downstream 240514 22035917 ~ 22089931 (+) False LOC122341843
TU33106 lncRNA downstream 240514 22035917 ~ 22064100 (+) False LOC122341843
TU33114 lncRNA downstream 473774 22269177 ~ 22287045 (+) False hdac5
XM_043232034.1 mRNA upstream 49329 21637743 ~ 21734127 (+) True crhr1
XM_043232045.1 mRNA upstream 49329 21681152 ~ 21734127 (+) False crhr1
XM_043232050.1 mRNA upstream 49329 21693416 ~ 21734127 (+) False crhr1
XM_043234699.1 mRNA upstream 332747 21447171 ~ 21450709 (+) True LOC122341350
XM_043233991.1 mRNA upstream 338715 21441922 ~ 21444741 (+) True LOC122340007
XM_043235271.1 mRNA downstream 1617 21797020 ~ 21842872 (+) False kansl1b
XM_043235273.1 mRNA downstream 1837 21797240 ~ 21842872 (+) False kansl1b
XM_043235270.1 mRNA downstream 1843 21797246 ~ 21842872 (+) True kansl1b
XM_043235272.1 mRNA downstream 8979 21804382 ~ 21842872 (+) False kansl1b
XM_043234630.1 mRNA downstream 103903 21899306 ~ 21918705 (+) True scn4ab
XR_006248723.1 other upstream 49329 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 369170 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 1469125 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1595373 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1596258 20185567 ~ 20187198 (+) False eftud2
TU33098 other downstream 179849 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 181106 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 733586 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 750755 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 1109974 22905377 ~ 22906695 (+) False LOC122341356

Expression Profile