RNA id: XM_043235455.1


Basic Information

Item Value
RNA id XM_043235455.1
length 2007
RNA type mRNA
GC content 0.39
exon number 10
gene id LOC122341813
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22374082 ~ 22382787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACCAGAATGAAATTCATGAGGTACATCCATCTTATATTTTTCCTAATTTTTCTTGGGACTGCACTGAGCATCTACTTCGTACAACTTGGCATGTTGAAAGTCAACAAAAGCACACTTGCAAACCGGTTGACTGAACTCCACATGGCAAATATTTCTCATCAAAGAGCTCAACTCATTCGGGAACTTGTGCCGGATCAAACAGATAACGTTATAGAACGCAGAGCAAATGAATACAAGCAACACAAAATCAGGACTAAAACGGATATTACAGATATTATTATTGCACCAGCCAACTCTCCTCTCAAATATCCAATAACAGGTTTCATGGTCGCTCCACTGAAGAAAAGCTTGATACCAGgTCTTGCTCTTAAAACACAAGAGAGAGATATAACAACAAACAACAGGGAGGTGTACAAGGTGTCTTTGAGCGTAAATAAAGGAGTGCTCTCAGTGAAGGATCTTCTGGATGGAGATCAGGTGGAGGGACAGGGTCAGAGTAATCTGACCATCTCATCCAGCAACATCACACATCTCAATGATCTTCTGTCCAGAGTGACCTACACCAGCACCATCTACCACATCAGGACATCAGACTTGGGTTATTTCAGTTTTGAGGATTACAAGGCCATATTTCCAATCATGATCAAAAGACCATCAATTCCTGTTTTGTATGACCCAGGACAAGatATCAACTCAAAGGTTACTATAGTCACCAAGACCTTTCTGAGATACAAGGAGCTGAACGTCCTTATCCAGAGCATCAGGAAATCCTACCCGGAAATCAAAATCATTGTTGCAGATGACAGCCTGAAGCCTGAACGTCTGTCTGGAAACAACATTGACCACTACATCATGCCTCCTGCACAGGGCTGGTTTGCCGGACGAAATCTGGTTGTATCTCAACTCACAACTAAATACTTTCTGTGGGTCGACGATGACTTTGTGTTCCTGAATGAGACACGCATCGAGAGTTTTGTGAAGATTATGGAAGCAAATCCAGAACTGGATATTcTTGGTGGTGAGGTTTCGGGGGAACAGTTCTACTTCATTTTTGAGTATGACAACGGAGATGAGAGTGAAGGTGGCTTCCTAAGACGTATTAGAGGATTTCATCAATCACTTCCAAATCATGATGGCTGCGTTCTAGTGGATGGcgttattaattttttcttggCTAGAACAGATGCTGTACAAGGAGTTGGCTTTGATCCATTCCTCAAAAGAGTGGCTCATAGTGAGTTTTTTATTGATGCACTTGGAAAGCTGATGGTTGCCTCCTGCAAAGGACTTTGTGTTGGTCACCAGGCACATCAGGTACAGTTCAAATATGACTTTTACAGGATTCAAGGAAAGCATGAAGAAGAGCGAAAACTGGCTCACCTTTTCTTTAAGAACTATCTTAATTACATCAAGTACTGATTAGTAATAATTTTGACCCCAGTGATTTtgattaaaacatacattttggaaaatatttgttaaatgtgaaatatataagaAGAAAACTGGAGTAGCACATCCACTTTAGACATGTGATATCATTTGCAGTTTCACTGTATATTTAccatgcatgttttctttttggattctttatttatgaaaaatgtttgattAATAACTTTTTACAACAGAGCCAGAGATCTGCCCATATACAGAAAAAAGGTATATGGAATATTAGTCATCTCAGTATTTCAAGAGGTTTGATAAAGGGTTAATAAGTATCACATCTATGGactctttgttattgtttttgtctcatgccatgtgctctctgtgccctaccttcccttcgtgataattgtgtaattgtcttcacctgctccctgttaatttagtcaattacgttgtgtatatttaagtcctgtgtgtttgtccgatcgtcaatgtcctTACTCGATGTCCATACATGGTTTTTGTTCCAGAGGTCTATAcatggtttttgttctgcctgcctgcctttgcatatttattttgcctgttTGCATTAAATCTGTTCAGTTTGTTA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33113 lncRNA upstream 37861 22288141 ~ 22336221 (+) False hdac5
TU33114 lncRNA upstream 87037 22269177 ~ 22287045 (+) False hdac5
XR_006250495.1 lncRNA upstream 284151 22035882 ~ 22089931 (+) True LOC122341843
TU33157 lncRNA downstream 128641 22511428 ~ 22640362 (+) True G22340
TU33156 lncRNA downstream 215231 22598018 ~ 22672911 (+) False G22340
TU33382 lncRNA downstream 341257 22724044 ~ 22725888 (+) False hoxb5a
TU33399 lncRNA downstream 382959 22765746 ~ 22766130 (+) False hoxb2a
TU33447 lncRNA downstream 516546 22899333 ~ 22903541 (+) False LOC122341356
XM_043231079.1 mRNA upstream 2410 22365276 ~ 22371672 (+) True LOC122333458
XM_043229772.1 mRNA upstream 11680 22356954 ~ 22362402 (+) True LOC122332454
XM_043231537.1 mRNA upstream 17563 22349117 ~ 22356519 (+) True nags
XM_043231545.1 mRNA upstream 17563 22349117 ~ 22356519 (+) False nags
XM_043235650.1 mRNA upstream 26315 22344662 ~ 22347767 (+) False si:ch211-237i5.4
XM_043235855.1 mRNA downstream 1944 22384731 ~ 22387485 (+) True gngt2a
XM_043235854.1 mRNA downstream 4056 22386843 ~ 22387485 (+) False gngt2a
XM_043234902.1 mRNA downstream 51586 22434373 ~ 22449649 (+) True col1a1a
XM_043228511.1 mRNA downstream 72615 22455402 ~ 22490790 (+) True ppp1r9ba
XM_043235129.1 mRNA downstream 186180 22568967 ~ 22575990 (+) True nr1d1
XR_006248300.1 other upstream 348171 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 397417 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 639955 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 959796 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 2059751 20314260 ~ 20314331 (+) True trnac-gca_3
TU33161 other downstream 146202 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 163371 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 522590 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 775462 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 1020654 23403441 ~ 23408814 (+) True LOC122341907

Expression Profile