RNA id: XM_043235459.1


Basic Information

Item Value
RNA id XM_043235459.1
length 1526
RNA type mRNA
GC content 0.36
exon number 11
gene id copz2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23103757 ~ 23114098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGGCGGCTCAAGGGCTGTAGTTGCAGACACGCCCCCTGTGAGTCAGAGGGTTTTAGGAGCGCTACTGTAATGACAGCTCAAAGCTGTCCACGTCAACACTGTGCTACCACCATGGACTCCGCGGCTCTGgAACCCTCGCTCTACACTGTGAAAGCGGTCTTCATCTTAGACAACGATGGAAACAGACTGCTTTCAAAGTACTATGATCCAGAGCTCTATCCCTCAATGAAAGAGCAGAAGAATTTTGAAAAGAATGTATTCAACAAAACACATAAAGCCGACAATGAAATTGCCTTCTTGGAGGGAATGACGATAGTCTACAAGAGCAGCATAGACTTGTTCTTCTATGTAGTCGGCAGCGCTCAGGAGAATGAGCTCATGCTGATggcggtgttgaactgcttgttTGAGACTCTCAGTCAGATGTTGAGGAAGAATGTGGAGAAAAGGACTCTGCTGGATAATATGGACGGAGTGTTCCTGGTGGTGGATGAAATCATCGACGGAGGGGTGATCCTGGAGAGTGACCCCCAGCAGGTCATTGAAATCAACTACAGGGCAGATGACAGCCCATTATCAGAACAGAGCGTGGCACAGCACATCACTGAAAAACTGGCTCTCACTTCTAATgtgttACAGTCAGCAAAGGAGCAGATCAAGTGGtcaattctgaaataatattttccatCACCTCTGAAGGAATCTGTAAATTATTGCAAGGGAATTtcgtttttttactttaatgagttgtaatttaattaattaatggaGTAGTGTACATGGGTAGTTGCATCTCATATTTAGtgatgatatatttatatattttttaaagagtaaATTAGGTCatttgtgtttggttttttttttgttaatgatataaaaaggcatatTTGCTCACTGGGCTCTGTACCAAATATCAACCAATACATACCTATGtcaaaagcagctttaaaggaattgcaattaattttagCCTCTACAAATATTGATATATTCCTGTTCTGTTGAAAGGAGGTACggctattttttcttttaacaaagaCTCTCATTTAAATGGTcacatcagaaatgttttgtcTAAACTTGTCTTTTATCAGttttggtatttttgttttgctttacaaaaaaatgttgtcaaaaaataattaacaaagttCTGTTACACTAGgccaatatataaatattttgctatatatgtgtttttttttaatgagggaAGGGCAATATTGTGCAATTGATATGAGTAGGTTACAGGCACTAAGATTATAATATAGTCCACTACAACAATAATAAGTGTCTGAAAAGCCACAACTATAGGTTAGATGTATGAAAAGTagcattaaaaaagtttaaaaataatttattttgttttaggtaTGCTatacaaaattaacatttccaTACATTtgattttctaataaaataaactgtgtaGTGTGttgtttaagttttaaaaaccATGGTTCAGGAAATACTTGCGCACAAAAATGTCacttaaaactaataaatgttcttttttttgta

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33498 lncRNA upstream 8335 23089473 ~ 23095422 (+) True G22581
TU33443 lncRNA upstream 75252 22940247 ~ 23028505 (+) True G22554
TU33452 lncRNA upstream 197062 22905742 ~ 22906695 (+) False LOC122341356
TU33447 lncRNA upstream 200216 22899333 ~ 22903541 (+) False LOC122341356
TU33448 lncRNA upstream 202655 22899333 ~ 22901102 (+) False LOC122341356
TU33504 lncRNA downstream 180 23114278 ~ 23116840 (+) True G22584
TU33611 lncRNA downstream 224316 23338414 ~ 23343588 (+) False dnal4a
TU33652 lncRNA downstream 229866 23343964 ~ 23348567 (+) False LOC122341898
XR_006250502.1 lncRNA downstream 282403 23396501 ~ 23400922 (+) True LOC122341922
XR_006250500.1 lncRNA downstream 298715 23412813 ~ 23414909 (+) True LOC122341920
XM_043235458.1 mRNA upstream 12821 23084146 ~ 23090936 (+) True cbx1a
XM_043235957.1 mRNA upstream 184796 22912566 ~ 22918961 (+) True LOC122342153
XM_043234705.1 mRNA upstream 195622 22899342 ~ 22908135 (+) True LOC122341356
XM_043235442.1 mRNA upstream 320662 22779834 ~ 22783095 (+) True hoxb1a
XM_043230271.1 mRNA upstream 333155 22765647 ~ 22770602 (+) True hoxb2a
XM_043231035.1 mRNA downstream 14686 23128784 ~ 23135038 (+) True LOC122333434
XM_043231044.1 mRNA downstream 14687 23128785 ~ 23135038 (+) False LOC122333434
XM_043231053.1 mRNA downstream 14687 23128785 ~ 23135038 (+) False LOC122333434
XM_043235616.1 mRNA downstream 44121 23158219 ~ 23163710 (+) True prr15la
XM_043235607.1 mRNA downstream 50264 23164362 ~ 23167244 (+) True atf4b
TU33451 other upstream 197062 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 556549 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 573697 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1077846 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 1127092 21975252 ~ 21976665 (+) True G22301
TU33550 other downstream 44151 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 289343 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 722001 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 936141 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 936640 24050738 ~ 24051863 (+) False LOC122342055

Expression Profile