RNA id: XM_043235479.1


Basic Information

Item Value
RNA id XM_043235479.1
length 1310
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC122341832
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4892115 ~ 4894607 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaatgcattaaaatgtctaaaCCCAAATTCCTAATCAGAATCACCCAAACTCTTTGTGACTTACTTAATATCGCATGAACTATGGAATGCAAGCAGGATTAGTCTCATGCATGTATCTGTGCATTGTGTCACCTTTTAGGGGGGCTGATGACAGCTAGACTGTTTTGGAAAGAGGAAGGACCATCGTGTGCAGGTTTAATCATCTTATGATGCTCAGAACTATAAAAGAGCTGATAGGGGAGTGTGTGTTGACAGAGAGTCGCATCCTGACCACCTCAACAAAGCATcgagacagaaacagaagacCAGCAGATCCTTATCGTTTCACTGCTATCGGTCTTATGGATATCTCCAAGAATAGGGATGTCTCCAAGCCTAAAGCGAGCAGCAAGGTTGCCACGCGAGCCCCGGCGCCTGGCAGTCCCCACAAGGGCCCACCCAAGTTCAAACAGAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCAatcatatttttctctctcacagacTTTAATGTGATCTGTCCGTGGGAGGCGTACAGTCACCTGGAGTTACATGAGCTGGCCCAATACGGCATTATTTGAGGTCACTTCCTGTTCCCACATCCCACTGAACAACATCCTGCACCTTAACatgtcttttaaataataatattcacacAGCAATATCTTTGGTTGATGTTCGGTTAGTTACGCAGAGACAACTTTTACCAGCAGTTATCAGTCATCAATAACAAAACGGACGTTAGTTAATCTACCTCTTCAAACTGAAATTTCATGCAGAACTAGATTCATTTCACTCTATCGCCAATtctaatttcagatttttactgtattgttgtACGTGttatagaattttaatattgacATGCAATTGACATTTTAGGTGTCAGCTTTTATTTCCATACGATCCTGAAAAAAACATAGCATGGTAGCGTgagtttctcttttcttttctttctttttttgaaatagtttttcattttgtcaAGTTGCAAATGTCCAAAATGAGTTTGGACACCGCGGGGTCTCAGTGTTTGCCCATAGCGCGAGTACTGGGAGCAGCTCTCTGTGAGAGCTCGGCCCAGTTTATTGGCCTTATGACGCTGGAGAGCCGTGCAAGAGTGAGTGCGGCTCATACCTGGGAGAGCAGAAAAGATTTGGACATAAAATAAAGTCTGATTGTTTTCATACTTTCAGTCTATCTGAGTAGTTTCTGAACCTCTGAAACATTATGCAGTCTGTAAAGCAAGATGGTTTACATAGGCCTTCAGGATTTTCAGCCAATCAAAACACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25365 lncRNA upstream 24797 4865208 ~ 4867318 (+) True G17018
TU25338 lncRNA upstream 98081 4792546 ~ 4794034 (+) True G17003
TU25320 lncRNA upstream 237861 4604054 ~ 4654254 (+) True G16991
TU25318 lncRNA upstream 241477 4602024 ~ 4650638 (+) True G16990
XR_006250421.1 lncRNA upstream 242944 4647091 ~ 4649171 (+) True LOC122341099
TU25289 lncRNA downstream 4232 4898839 ~ 4903279 (+) True LOC122333539
XR_006248639.1 lncRNA downstream 4890 4899497 ~ 4902880 (+) False LOC122333539
XR_006248640.1 lncRNA downstream 5817 4900424 ~ 4902886 (+) False LOC122333539
TU25293 lncRNA downstream 11049 4905656 ~ 4906320 (+) False G16981
XR_006250507.1 lncRNA downstream 18087 4912694 ~ 4914493 (+) True LOC122341984
XM_043235366.1 mRNA upstream 61634 4827437 ~ 4830481 (+) True LOC122341768
XM_043229580.1 mRNA upstream 71459 4812939 ~ 4820656 (+) False wdr48b
XM_043229598.1 mRNA upstream 71459 4812975 ~ 4820656 (+) True wdr48b
XM_043229589.1 mRNA upstream 71459 4812987 ~ 4820656 (+) False wdr48b
XM_043229569.1 mRNA upstream 79646 4800795 ~ 4812469 (+) True LOC122332276
XM_043235740.1 mRNA downstream 13744 4908351 ~ 4934319 (+) False LOC122341982
XM_043235743.1 mRNA downstream 23773 4918380 ~ 4934319 (+) True LOC122341982
XM_043235739.1 mRNA downstream 23773 4918380 ~ 4934319 (+) False LOC122341982
XM_043235741.1 mRNA downstream 23773 4918380 ~ 4934288 (+) False LOC122341982
XM_043235742.1 mRNA downstream 23773 4918380 ~ 4931845 (+) False LOC122341982
TU25278 other upstream 345548 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 358817 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 405651 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 432980 4458698 ~ 4459135 (+) False G16979
TU25239 other upstream 453914 4437288 ~ 4438201 (+) True G16955
TU25292 other downstream 11049 4905656 ~ 4906966 (+) True G16981
XR_006248137.1 other downstream 662401 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 702492 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 1203594 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 1298133 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile