RNA id: XM_043235518.1


Basic Information

Item Value
RNA id XM_043235518.1
length 3246
RNA type mRNA
GC content 0.39
exon number 14
gene id LOC122341850
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17089814 ~ 17097965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCACCCTGCGTTACCTTGAGGGGTCGGTGATCTTTCAGCGCTTACACAATCTACAGCCTTTGAAAGCAGTATGTAAACAAGTACAGATGATTTTGCGTACGTTGTAACGTTCATAAGCTGCTGCTGATTTTAAAGACCGCGCGAGACCGATGCAGCAGCGACGGCGACTGCGCGTTAAAGTTTGGCTTTGTGTTTCGGTTTGCTTTCCTGGATGCTGATACATTTACGTGGACAGAGCCGCTCGCTGAAACTCGTGTATATTACGTGAGGATTTAAGTGAGCTGAGGATGGCGGATATCAGGAcatataatgttgttgttttgggaGTAgggtttttgctcatttttacagCCTTCACCACCTGCGGTAATATTGAAcaaACAGTGGTGAAAAGCTTGAACAGCACTAACTTCACCGGAAGTGGGTATCACAGccTTGGAATAATATATGGAGTTTTTTCATTCTTCAATGTGTTAGCTCCCACTATCGTTGCAATAATTGGACCACAGCTTACGATGTTCCTGAGCGGAGTTCTTTACAGtggTTATATAGCTGTATTCATCATTCCATCGACATGGTCCTTTTATTTCACATCAGTAATAATTGGCATTGGAGCGGCCATGCTCTGGACAGCTCAAGGGCACTTTTTAGTGGAGAACTCCGATGCTTCCACCATCAACAGGAACACAGGGTTGTTTTGGGCTTTACTGCAGTGCAGTATGTTGTTTGGAAATCTATACGTTTATTTTGATTGGAaaggcaaaactgaattttcagATAGAGACAGAAAGATTATGTTTATTGCGCTGCTGGTCATCTCAGTGCTCGGGACGCTGAGTTTTCTTGCCCTGAGGAAGGTCTGTCAGGAGGAAGATGTTCTCTCTGAAGAGGAGGGCCGCTCACTTTTATCCACGAGACTGAAATATAAACAGAGAGCAACATCTGCTGTGATGGAAGCTAAAACAGAGTTTAagACGATGTTGGaaatcttcaaaacaaaaaccataTTGTTATTAAGTTTCTGCATGGCATACAGCGGTTTGGAGCTGTCATTTTACAGTGGCGTTTATGGAACCTGTATTGGAGCTACGACGCATTTTGGCGATGCAGCGAGAGGCTTAATCGGCATCTCGGGCATTGTGCTGGGAATCGGAGAAATAGTTGGGGGAGGATTGTTTGGCATTGTACTGAAGAATAACCGTTTCAGGCGCACATCAGTTGTCTTTTTAGGGATGGTTGTGCACTTTGTGGCCTTCTACTTGATATTCCTCAACATACCAGATGATGCACCTGTGGTTTTCCAAACAAGCTCACAGCATAAGCCGTATCTGATACCAAGCGTGTCCATCGCCCTGCTGTGCAGCTTCCTGCTGGGTCTTGGGGACAGCTGTTTCAACACTCAACTCTACAGCATTCTGGGCCGGGCGTTTGCTGAGCAGAGCGCACCAGCCTTCGCTATATTCAAATTCATACAGTCTATTTTTGCAGCTGTGGCGTTCTTCTACAGCGGTTATATTTTGCTGAGCTGGCAGCTCCTCGTGATGGTCATCATGGGATTTACGGGAACGCTGTGCTTTTTCATGGTGGAGAGGATGCAGAACATGTCAGCTGACACGCAGGAGTATTAGGTCGGAGTCTTTCTCAGGACACGTTTCAGTAAGTGTACGACTTGCACTATTTGATGTAGGATGACGTTGTTCGTATAAAACACTACACGTGACTTTCGTGAAagtgcctttgtttttgttgtcttaTACAGATGGGATtacaatgattattttttatttacattctaagaTAGAAAACCGTTAGTTGGAGCTGCATTATAATTTTCCATCTTTAATGgaattgtattacatttaatttgatatatcAAATATAGATATATCTCACATATATTACTTGGTTTGGTTATGTTATGCTGTGCTGACTGACGTGGCAGTTGTCTTATACTGACACCTCGTGGCGTACTTACAGCATCATGCAAAAGCCAAAGTGGAATTTCCCTCCACTTATTTATTCCATGAGCTAAAGATGAATCTCTTGATTATCTGGTCATGTGATTTCATGATTGCACCTGCTCCATGTAAAATATAACAGCTTTTATTATGCCGCTGATATGACTGGAGCATTATTCTCGTGTGAGACTTCAACCTCTTCCTGTGTATTATGTGCTATGCAAATacttaataagtaaaaatactGAGCGGAACGATGTTAGTGACAATCAGAGGACGTCTCTAATTAACACCTAAACTAAATTATATGTACCCCACTATACACCATACGACTTACACTCAAAGTTTGGAATCatttagatgttttatattttgcaaatatacatatacgGCATATACTAAAACGCAGCGGAGCTGTAACATTTCAGTCAAGAAAGCATTTCTCTCAGGGCATAGTTGTATGATTTTTATAGGATGGTTAACTCACAAAGGCTAATGACATGCCAATTCACTTTCTTATGTCTTTTCTAAAAGGATACTTCATATACACTCGGTGTTCTTTATTATGAACCATTTTAAAGTTGTTAAAACCGTACCAGTTGAACTGGTTCAGATACTGAAAGTATTAGATAGCCAGACAGTAATGTCATGAGAACTTTGTCACGAGACCGGTTTAAATAACGTGTACACAAAGGTCGTCTTCACGACAAATGTCTTGAAGTCACAAGCCTTCTTGGCTAAAGTGCTGTTTATCGTAAACCAATGTGTGTCTGAAGCAACAGCTCTTTAAGTATGAAGTTACATGAGATTATTTGTTCAGGAACCAGTTtagtaattctgacttttttataATTCAGTTGCCTATaataaagaagcaaaaaaataattgaggtttttacattacattttacgctgcataaaatgtgcattacaCATAAACCTTGTGATACATAGTAGTTGGATctgcattttgtatgttttaatgtgtaatttaaatgcattgtgtctttttacatttgtactACACGCTATGTTATCATTTATGTGtcatattgtaaatatttgtgtttagaTTTAAGCCTCTTTGGgacaaaattattttcatttttaattgacaaTCAGTATGAAATGTTCTAACCTTCTGGGTttgatttgatgttttaatgcatttcaatatTCAAGGactattgttattgttgttattattattattattattataatgtgtaCATGTCTGCctgtaaattaaatgaaattgttCATGTCAGGttgaaaaattaatatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30937 lncRNA upstream 13640 17075788 ~ 17076174 (+) True G20831
TU30936 lncRNA upstream 14239 17075353 ~ 17075575 (+) True G20830
TU30935 lncRNA upstream 14990 17074622 ~ 17074824 (+) True G20829
TU30904 lncRNA upstream 26991 17057704 ~ 17062823 (+) True G20801
TU30899 lncRNA upstream 47410 17039191 ~ 17042404 (+) True G20797
TU30906 lncRNA downstream 10027 17107992 ~ 17108694 (+) True G20803
TU31064 lncRNA downstream 405931 17503896 ~ 17516429 (+) True G20908
TU31072 lncRNA downstream 455409 17553374 ~ 17563364 (+) True G20915
TU31095 lncRNA downstream 474165 17572130 ~ 17572473 (+) True G20927
TU31137 lncRNA downstream 552802 17650767 ~ 17651301 (+) True G20953
XM_043235204.1 mRNA upstream 44522 17043049 ~ 17045292 (+) True litaf
XM_043235100.1 mRNA upstream 52327 17024634 ~ 17037487 (+) False zc3h7a
XM_043235101.1 mRNA upstream 52327 17024867 ~ 17037487 (+) True zc3h7a
XM_043235717.1 mRNA upstream 154295 16934133 ~ 16935519 (+) True LOC122341973
XM_043229195.1 mRNA upstream 186844 16895969 ~ 16902970 (+) True galr2b
XM_043235913.1 mRNA downstream 15083 17113048 ~ 17116319 (+) False nsmce1
XM_043235912.1 mRNA downstream 15187 17113152 ~ 17116319 (+) True nsmce1
XM_043234677.1 mRNA downstream 39965 17137930 ~ 17200630 (+) True LOC122341316
XM_043230135.1 mRNA downstream 283818 17381783 ~ 17384185 (+) True LOC122332748
XM_043230820.1 mRNA downstream 325323 17423288 ~ 17449492 (+) True hs3st2
unassigned_transcript_287 other upstream 83829 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30773 other upstream 390332 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 390332 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 390332 16697999 ~ 16699482 (+) False LOC122331507
TU30661 other upstream 884646 16179910 ~ 16205168 (+) False gna12a
XR_006250523.1 other downstream 15187 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 65736 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 621217 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 806639 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 976432 18074397 ~ 18075574 (+) False LOC122341796

Expression Profile