RNA id: XM_043235527.1


Basic Information

Item Value
RNA id XM_043235527.1
length 2496
RNA type mRNA
GC content 0.47
exon number 13
gene id ccdc47
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11633421 ~ 11640057 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCGGCGCACCATAAACGCCCAGATCTTTTCTTATCCTTGTTGTCAGGGTTCGCACAGCATTGTGGGTAGAGTAGGTCAGATGACCCTCGAGTCTCCTGTGAGGGGTACAGCTGCTGTCACACACTGAAAGGAAACGCCGATATTCACAGGTGAAGCCATGAGGCACCTGGTCTTCCTTCTCCCagccctgctgctgctgctggcccTCCCGGACACTAGGGGGCGCTACAACGACGACTTTGATGACGGTGAGGACATCGCTGAGTTTGATGACAACGACTTCGCTGAGTTCGAGGATGTCAGCGAGGACCCAGCAGTCGATGCGGAGAAAGAGCCGCCCCCACGAGCAGCCCCCTCTTCCACACCCATAGAGGACGACGAAGACGAGGCCACAGTGGAGAACGAGGACAACCAGGACGAGTTTGAAGATGCTGATGCACAGGATCAAGACATGTACAGCAAGTATGACCACGAAGAGTTTGAGGGCTATGAAAAGACCAACCCTTCATTCAAAGACACTCTTATATACAGAGAGGTCCCAGCACACCTTCAGAACAGCTGGGAGAGTTATTACATGGAGATCCTGATGGTCACGGGTCTTCTCGCCTATATTATGAACTACATAATCGGCAAAAACAAGAACAGCAGACTTGCCCAGGCCTGGTTTAATTCCCACAGAGAACTTCTCGAGAGTAACTTTGCCCTCGTGGGGGATGATGGTACCAGTAAGGAAGCCAACAGTACTGGGAAACTGAACCAGGAGAATGAGCATATCTACAACCTTTGGTGCTCAGGACGTGTCTGCTGTGAGGGCATGTTGATTCAGCTCAAGTTTTTGAAAAGACAGGACCTGCTGAATGTGTTGGCCAGGATGATGAGACCAGCCTGTGATCAAGTGCAAGTTAAAGTAACTCTGAATGATGAGGACATGGACACGTTTGTGTTTGCCCTGGGGAGTCGGAAGGCCATGGCGCGCCTGCAGAAAGAGATGCAGGACCTGAGTGAGTTCTGTGGTGATAAGCCCAAATCAGGGACAAAATATGGCATCCCTGAATCTCTGTCCATTTTATCAGAGATGGGAGAGGTCACGGATGGAGTGATGGACAGCAAGATGGTACATTACCTCACCACTCATGCTGAAAAGATTGAGTCCATCCATTTTTCGGACCAATTCTCTGGTCCAAAAGTTATGCAAGAGGAAGGTCAGCCCTTAAAGCTGCCCGAGACCAAGAAAACACTGCTGTTTACATTTAACGTGCCTGGGATGGGTAACACATCTCCCAAAGATATGGACAGTCTGCTGCCTCTGATGAACATGGTGATCTACAGCGTTGACAAGGTCAAGAAGCTTCGTCTGAACAGAGAGGGGAAGCAGAAAGCAGACAGAAACCGTGCTCGTGTGGAGGAGAACTTCCTGAAGCAGACTCACGCTCAGCGACAGGAGGCCGCCCAGACGCGCCgcgaagagaaaaagagagcggAGAAGGAGAGGATCATGAACGAGGAGGATCCTGATAGACAGCGCCGCTTGGAGGAAGCCGCTCAGCGCCGCGAGCAGAAGAAGATGGAGAAGAAGCAGATGAAAATGAAGCAGATCAAAGTGAAAGCCatgtgagacacacacacgcgttcGTAGTCATCAGAGAAACAGTCTATCTACTACTTCCACACATGCTAATGTACACTCTTCTACATGAATGTGCATGCCATTCGATTGGCTGCTATTGCACCCATAGAAACGCTCTGTCCAATCAAGAGAAAGCGGCTGGTTAAGGAGTAAATCTGATCTTTAAAAGACAACTGGATTGGAGATGTCTGAACAGTTTGAACATGTTTTACCGTAGCAATCATTTCAAGCGTGAGCTGTCTGCCTAATTGCATGGCGGTTTTTAAATTGCAAGACTATTGCTTTTTGTGGGCTTTGCCGTAATGTTGTGGACCTTTTGGGCCTCTTCAAAGCAACTTGCCACTTTAGCCAACCTTTTCCAATTCAGTTGTCTCCTGGAGTTCAGTTTGGAGCCTCCGAAGCTCTGTGTAGAGGACCTATGCTTTCATTTCTACTCCAAGAGATTTAACTTCACCTCCTTAAAGTTTCAGCTGTGCTTCTTTTAAAAGTGAGATCCAGGAGTGTTTTTAAAAGGAACTGGGTGGGTAAGAAAGCTACCTTTTTTGTACTATAGTGCTTCCTTAACCCTATTTCTAAGAGTTGATGATTGCAAGCGTTTTTATAGATGAGTAATAGGCACGTTATCATTGTCtttctatataattttttttttaataagcaaagGCCCACTGTGAATTGTCACTGTCAAGGCAGCACAAAGTCCTTTATACGTATTTAACAGAggtgaaattttaatttatcgTTAAGTTAATAGTCGATGAGAGCATCCATGAGCTTATCATGTTTATGAGTGAACACTGACTGTAAccctttttttctgtaacatttgttaatgagacgcttaaataaataaaacattcactgaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24962 CCDC47; PAT complex subunit CCDC47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28478 lncRNA downstream 219116 11411985 ~ 11414305 (-) False syt17
TU28479 lncRNA downstream 219116 11413407 ~ 11414305 (-) False syt17
TU28475 lncRNA downstream 222705 11410335 ~ 11410716 (-) True G19117
TU28460 lncRNA downstream 297621 11334983 ~ 11335800 (-) True G19108
TU28853 lncRNA upstream 129665 11769722 ~ 11771648 (-) True G19375
TU28859 lncRNA upstream 203957 11844014 ~ 11844199 (-) True G19381
TU28861 lncRNA upstream 213691 11853748 ~ 11880082 (-) False G19383
TU28865 lncRNA upstream 213691 11853748 ~ 11880082 (-) False G19383
TU28871 lncRNA upstream 213691 11853748 ~ 11880959 (-) False G19383
XM_043234666.1 mRNA downstream 31040 11597240 ~ 11602381 (-) True moto
XM_043235466.1 mRNA downstream 181978 11449629 ~ 11451443 (-) True LOC122341820
XM_043235463.1 mRNA downstream 185718 11445525 ~ 11447703 (-) True apnl
XM_043235464.1 mRNA downstream 185800 11445525 ~ 11447621 (-) False apnl
XM_043235461.1 mRNA downstream 192113 11437587 ~ 11441308 (-) False LOC122341818
XM_043234573.1 mRNA upstream 5841 11645898 ~ 11676327 (-) True kcnh6a
XM_043228279.1 mRNA upstream 41293 11681350 ~ 11688119 (-) True LOC122330909
XM_043234643.1 mRNA upstream 54215 11694272 ~ 11714719 (-) True map3k3
XM_043235253.1 mRNA upstream 75667 11715724 ~ 11728001 (-) True limd2
XM_043235421.1 mRNA upstream 91936 11731993 ~ 11739714 (-) True ddx42
XR_006248663.1 other downstream 568838 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250542.1 other downstream 853225 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 854186 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 1237080 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 2170516 9426572 ~ 9462905 (-) True G18433
XR_006250462.1 other upstream 54215 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 72763 11712820 ~ 11727975 (-) False limd2
TU28829 other upstream 75665 11715722 ~ 11727975 (-) False limd2
TU28830 other upstream 75665 11715722 ~ 11727975 (-) False limd2
TU28832 other upstream 75665 11715722 ~ 11727975 (-) False limd2

Expression Profile