RNA id: XM_043235541.1


Basic Information

Item Value
RNA id XM_043235541.1
length 3074
RNA type mRNA
GC content 0.41
exon number 4
gene id c3h16orf72
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18124994 ~ 18129811 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGAAACTGCGCAGGGCAAAAGCGATCCTCAAACCGGGGTAGACAGCTACAGTCCTGGGTAATTAGATTTCGGCgtcacaaaagacaaaacattgCACCTCATTTCGTTTTAATCCAAACCCGCAGATCCAGAACTAAGGATATTAACCGGCGTTTATCTGGTATGTGATTTCAAGAACGCCAATCAACCCGCGAGAGCAAGAAATCACTCAGAAAAAGAGCAGAAGTTCACCGAAGTTTCTCAGTGTTCATCATGGAGGAGAAGAAGGAGGAGAGCGAAGCGGAGATCCACGAACACGGACCCGAACACTGGTTCTCCAAATGGGAGCGCCAGTGCCTCGCGGAGGCCGAGAGGGGAGAGCCGAGCGAGGAGGAAGTGGACCAGAACCAGGAGAAACTCTGGCATCTCTTCCAGAATTCCGCCACGGCGGTGGCGCAACTTTATAAAGATCGAGTCTGTCATCAGCAAGGACTGTCATTGTGGTCTCCATTTCAAAACGCTGCAACAGCGGTGACTAATCTTTACAAAGAAAGCGTTGATGCACACAAGAGGAGCTTTGACTTAGGAATCCAGATCGGTCATCAGCGACGTAATAAAGATGTTTTGGCCTGGGTAAAAAAGCGAAGGAGAACTATACGAAGGGAGGATTTGATAAGTTTCCTATGTGGTAAAGCGCCACCACCAAGGACTTCTAGAGCAGCCCCCAAACTGACTGTCATGTCTCCTAACCGACCACCTTCATCAGACACCGTATCATCTGTAGAGACTGATTTACAGCCCTTCTGTGAGGCCATAGCACTACATGGTTTAAGCGGAGCAATGGCCAGCATCAGCGTCCGCTCAAGCACTCCCGGCTCTCCAACGCATGTCAGCGGCAGCTCGAATGCAGGACGCAGAAGGAACGGACTGCACGATGTGGACTTGAACACTTTCATATCGGAGGAGATGGCTCTCCACCTCGGCAGCGCAGGCACCAGGAAGCGGACCTCGGTCCAGTGCACCGACGTCATCACAGACTCCCCAACCCATAAACGCAACAGAATGCTCTGAACTCTGAAGCTGTTGTTCTGTATGCtttgtgctgcttaaaataaaagccacttgatcCTCAACACTTGCGTTCCCTCAAAAGGAAACAAGGGGCGCAGTACACTTGCATATTCAGTACAGTATGCCATACAGTGGAGGCTAGTTCATGCTGCTCCATGCATGTTGACttactatttttgtttgtttttttttgcactcacCACACCACGTTATGAATTTTTTAGTTGTATGATGCTGTCAGTACccattttattgaaaacataTTAACTACTAGATTATAACATCtaaataggctttttttttctagttgaCAATATCTCCTAGACGCGCTTCCTAGTATTGCCAAGCTAATaactcaaatgtttgttttcagataACGACGTGAGCATCGGCCCATTTCCCATATTTTTTCAGTTCTCCTTCGCACTCATTGAATGGCAGTTCTGTTGTGACCGGTTTAGAAATGTGCAACGTTATTATTCATACTTGAAACTGCTGCTGATTTATACGTTTGTGTGCTCTTGAGAAGGTTGCAATAATGATTTTGCACTAACGcgttcagtttttttgttttttttaacgaaCCGTATAGACGTCGAGAGAAAGACGAGGGAAGTGAGGCTCGTGATACGATGGTGcaattttttgacatttttacatttcaaggCTGTTGTGATTTGGTTTTGGGGTTAGGCGAGTCTTTGTGCTGTAAGAACGGTGTTAAGCGGAGCTTTCTCTCAGGAGAGGTACTGAAGTAGAGAAAAACTGTGTCGTCTTGAAATTGAAGTGTCCTTTAAGTGCTTTCCAAATCCAGGTCAGAGGATTTGGAGAGCTGCACATGTACGGTCCAGCTTTGTGCTGATGTAAAGAAGTCAAGCTGGACTCGGAACCCcttaaaagtagaaatatatGATAATATGAGCTCCGGGGGAATGAAAGCGTGTGCTCTTTTGGCATTTGATGCACAAATATACCATTCTTGATTTAACgtgacagattttatttttgcccttgtcattttttacataatatacattaagTAGAAAGGCCAATTTAGTTGATGTGATCCTCACAATGACGCTTGCAGACTGAGTGTATGATATGTCAGGTAACTGGTGGTGGGGAATCATGATGTGGAGTGTATTTTCTGtgacatatttaattacaaatgttacaaaagtcttttttttttttttagtaatttgaaTACTGGATGTTTGGTTATTGATTTCATGACTAATtccataaacatttatttttcataaatgaaagCTAATATTGATTACTCCCGGAAGGAAGTGTTCGTCAGTGATCGAACTGACGTgtaatgcattttgttcatttaaaggtCAGGAGGTAAAAGATAACATTTTGCGGATGTTGGGTTGGAAAGTAAATTGTCTAGATTATCCAGAACAAACCGCAGTtgccatttttgaaaaaaaaaaaaatcagaaaaccTGCATAAGTTATAGGCTAAGTTATTAAAGATGCATTTGTATATTGACATCAATTGTGTACGTtttgtttacagtattttaacCAAAATAGAATTTGTCGCATCCAATTGAGCCTGATAACAGCCACTTGTACCTCTACTGATTAAAACAGTGATTCTTGTTTGTTCAGTAATTAAATGGATCTTTACACATCTGTTGTCATTGCAGTAGAATTTGGAGATAACTGCTTATATATGCAATGCGTTGGGagttatgtttaaaaaaaaaaaaaagagagaggcacAAGTCAGTGATTGTAAAAGCTTCTTCCTGACAATCTAAATCTTCTGGATGTACACCTGTCATGCAGAGATGGGAACTATTTCAAATCACTGTGATTCTTGTGACTTGTCATAGACGTGGACGGTGTTTGCTGTGAGGTGCTTCAGTAACTGATGCTCAGCTGCCCTCTTGTGGCAATtaatacaataacaaaaaaaataaaaataaaagatttccCTACCcaatttttgtgaaaatgaaaatatacacaaaaatacattaaatgaaaagctGCAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31309 lncRNA upstream 5568 18116538 ~ 18119426 (+) True G21073
TU31270 lncRNA upstream 57676 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA upstream 82373 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA upstream 82373 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA upstream 83312 18038561 ~ 18041682 (+) True G21050
TU31312 lncRNA downstream 28360 18158171 ~ 18158546 (+) True G21076
XR_006250480.1 lncRNA downstream 444876 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 446202 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 522550 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 572773 18702584 ~ 18703683 (+) True G21180
XM_043232241.1 mRNA upstream 23061 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232257.1 mRNA upstream 23061 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232249.1 mRNA upstream 23061 18097681 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232263.1 mRNA upstream 23061 18097682 ~ 18101933 (+) False si:ch211-157c3.4
XM_043235425.1 mRNA upstream 49378 18074075 ~ 18075616 (+) True LOC122341796
XM_043235078.1 mRNA downstream 242946 18372757 ~ 18378482 (+) False atf7ip2
XM_043235080.1 mRNA downstream 242946 18372757 ~ 18378482 (+) False atf7ip2
XM_043235084.1 mRNA downstream 242946 18372757 ~ 18378482 (+) False atf7ip2
XM_043235079.1 mRNA downstream 243071 18372882 ~ 18378482 (+) True atf7ip2
XM_043235082.1 mRNA downstream 244365 18374176 ~ 18378482 (+) False atf7ip2
TU31277 other upstream 23062 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 49420 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 218351 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 401571 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 929110 17163701 ~ 17195884 (+) False LOC122341316
XR_006250035.1 other downstream 276155 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 313579 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 376319 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 552543 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 596150 18725961 ~ 18732098 (+) True G21182

Expression Profile