RNA id: XM_043235549.1


Basic Information

Item Value
RNA id XM_043235549.1
length 2115
RNA type mRNA
GC content 0.48
exon number 13
gene id st13
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23636361 ~ 23644540 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGAAGGACCcctgttgttttggttttgtcaCGGTTGTGAGTAGTTTAATTCCCGCCTGATCAAAATTCGCAGTCTCGCGCGTGCAGAGCGAGTGCGATCTGGCGACCCTCAAATCGCTGCTGGGGAAGCGCGTTTTAGGCACTTTGCTCTTTCAGCACGTTGTTTGCTCTTGAGTTTGCTTGGTGTCGTGGAATATGGATCCACGGAAAGTGTCCGAGTTAAAGGCCTTCGTGCAGATGTGCAACGATAATCCATCCGTGCTGCATCTGCCAGAGATGGGCTTCTTTAAGAGCTGGCTACAGGGAATGGGAGCAAATATACCATCACCAACAAAGAATGACAGCTCATCGTGCAAGGGAGGCTGTCCATGCGATGGGGCCCCCAAAGCAGCGCCAGAACCCCAACCCGAACCTGCCCCGCCATCTGAGAGCGAAGAGAGTGATTTAGAAATTGACAATGAAGGAGTGATCGAGCCCGACACAGATGATCCTCAGGAGATGGGCGATTATGAGAACCTGGAGGTCACAGATGAGATGATGGACCAGGCCAATGAGAAGAAGATTGAGGCTATTGGGATGTTAGGAGACGGTGACCTACAGAAAGCTCTGGACCTCTTCACAGAGGCCATCAAACTCAACCCCAAACTGGCCATCTTGTATGCCAAGAGAGCCAGCGTATATGTGAAAATGCAGAAGCCCAACGCCGCCATCAGAGACTGTGACCGAGCCATCAGCATCAACCCAGACTCAGCCCAGCCCTACAAGTGGAGGGGGAAGGCACACAAGTTGCTCGGTCACTGGGAGGACTCCGCTCGAGACTTGGCCATGGCCTGTAAGCTGGACTACGATGAAGAGGCCAGTGCCATGCTAAAAGAAGTCCAACCAAAGGCCAGCAAAATTGTTGAGCACCGACGCAAATATGAACGCAAGCGTGAAGAACGAGAGATCAGAGCACGGCAAGAACGAGTGAAGAAAGCGAGGGAGGAGCACGAGAAAGCACAGAGGGAAGAGGAAGCCAGACAACAGGCTGGAGGGGCACGTGGAGGATTCCCAGGAGGTGCTGGTTTCCCAGGTGGAGCTCCTCCATTCGGAATGCCTGGACTTAACGAGCTGTTCAACGACCCAGAGGTTCTCATGGCCATGCAGGACCCAGAGGTGATGGCGGCATTCCAGGATGTGGCGCAGAACCCCGCCAACATCTCCAAGTACCAGAGCAACCCCAAAATCATGGCCCTGATCAACAAACTTAGCTCCAAGTTTGGCGGCCAGCAgccctaaaaaaataaaaagggccGAAAGAGTCCATGTCCAGTTCCAATACTCTGCTGTAGCTTTTTCTGGGTTTCTTGCCATAAATTACAGACAGCACTTAGCTTATGAGCCACTAGATGTACTGATTTTAGACGAGTCTGTGCTgatgaaagaagaagaagaaactatGAAAGAGTATCGGAACAAGACCGGAGATGTGAGATGAGAGGTGTGGCGCTTTTTGGGGTGGGGGGATTCGCTCGAGCGACGCATGAAATAAGAATTGGGTTTATTCCTTTAGCGATTTGTTGGGGACGAACTATATTGTGGGCTTCACTGAGGCCGACACATTTAGCACTTACGATCCTGGTCTCTTCTCCACAATATCAGGGGGGTTGGATCGGAGAGCCTATTCTCGCTGGCAGTCGCTGCATTGACAAACTGGATTTAACAAACATGTGTCCATCCAGCAGCCGATCATTCCAGGGATTTAGTCTAATTATAATCACCTTCATCCATTCAGTATGCCGCTTAGCTTGTTTGTTGTCTTATCCAGCGGGATCCGGAATCAAAACGGGGTCtaagattatatttatacatatccCCTGTCCAAAGCAATCAGTCATTCACTTACGGTTTAAATTTCATGGGTGtttcttttaaaggtttttgattcatgtttttgaggttttttttatttcgcgCTCCTCACCCTCAGTGTAACCTAACATTGTTTTCAGTCTCTCATAAATGcgaaaaagtgaaaattcaaTAATGAACAACTTTCTTATTGTGACGCATTTGCATCTTGTATGGATTTCatgatttaattcaataaacatTTTGGTTGTTGCAAATATAa

Function

GO: NA

KEGG:

id description
K09560 ST13; suppressor of tumorigenicity protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33791 lncRNA upstream 14707 23578476 ~ 23621654 (+) True G22758
TU33788 lncRNA upstream 58120 23574898 ~ 23578241 (+) True G22757
TU33784 lncRNA upstream 73115 23563040 ~ 23563246 (+) True G22754
TU33712 lncRNA upstream 204595 23430004 ~ 23431766 (+) False zmp:0000000912
XR_006250500.1 lncRNA upstream 221452 23412813 ~ 23414909 (+) True LOC122341920
TU33837 lncRNA downstream 23365 23667905 ~ 23672990 (+) True G22800
TU33831 lncRNA downstream 26854 23671394 ~ 23749009 (+) True G22795
TU33845 lncRNA downstream 70686 23715226 ~ 23721719 (+) False c1qtnf6a
TU33840 lncRNA downstream 109982 23754522 ~ 23755997 (+) True G22802
TU33856 lncRNA downstream 114203 23758743 ~ 23759342 (+) True G22816
XM_043235508.1 mRNA upstream 48733 23582431 ~ 23587628 (+) True cbx7a
XM_043235087.1 mRNA upstream 156070 23444986 ~ 23480291 (+) True mrtfaa
XM_043235613.1 mRNA upstream 192287 23438398 ~ 23444074 (+) True slc25a17
XM_043235579.1 mRNA upstream 205959 23424621 ~ 23430402 (+) True zmp:0000000912
XM_043235605.1 mRNA upstream 215387 23415427 ~ 23420974 (+) True sp100.4
XM_043230902.1 mRNA downstream 10971 23655511 ~ 23661345 (+) True napsa
XM_043230858.1 mRNA downstream 29492 23674032 ~ 23681012 (+) True si:ch211-256m1.8
XM_043235475.1 mRNA downstream 37945 23682485 ~ 23684711 (+) True mpst
XM_043235476.1 mRNA downstream 40313 23684853 ~ 23687289 (+) True LOC122341829
XM_043235515.1 mRNA downstream 51653 23696193 ~ 23705438 (+) False il2rb
XR_006250499.1 other upstream 227547 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 472645 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 729666 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 1089153 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 1106301 22528989 ~ 22530060 (+) True G22344
unassigned_transcript_294 other downstream 191559 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 405699 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 406198 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 450484 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 789515 24434055 ~ 24439463 (+) True G22996

Expression Profile