RNA id: XM_043235563.1


Basic Information

Item Value
RNA id XM_043235563.1
length 3469
RNA type mRNA
GC content 0.49
exon number 21
gene id sgsm3
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12530109 ~ 12544481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGAAGGAGGACAGTATTAAGGGCCTGTGAACCTTGACCTGACCTGCTCCAGTCGGACTCCTCTCTTTATACGCTAAAGAAAGACTCTTCAAACTTCAGGACCATGTCAACAGGTAATTACACTCCAGCCCCAGGGGGCCCTTTTTCGGCCCTCACACCCAGCATGTGGCCTCAGGACATTTTGGCAAAGTACTGTCAGAAAGACCCAAATATGGAATCAGAACGGCAGTATGATGAATTTGGGTTTCGGATCGATAGTGAAGacgGGGTTGAGACAAGTAAATGGCAGCGTGGTGAAGGAGCTCCTCAGAGAGAGGACCCTCAGCAAAGACTTCGCTGGCAAGCACACCTGGAGTTCACGCACAATCACACTGTAGGAGACCTGACGTGGGACAAGATCTCCCCCTCCCTGGCTCGATCTGACCGCCTCCGGACACTGGTGCTGGGGGGCATACCACACAGCATGAGACCACAGTTGTGGATGCGTTTGTCAGGGGCCCTGCAGAAAAAGAGAACATCAGAAATTTCCTACAGGGAAATCGTCAAAAACAGCTCCAATGATGACACCACAGCAGCCAAACAGATAGAAAAGGATCTTCTGCGGACCATGCCCACTAATGCGTGCTTCAGCACCATGTCGAGTGTGGGGGTGCCCAAGCTCAGGCGGGTCCTGAGAGGGCTGGCGTGGTTGTATCCAGACATCGGCTACTGTCAGGGCACAGGCATGGTGGTGTCCTGTCTGCTGCTCTTTCTGGAAGAGGAGGACGCTCTGTGGATGATGTGTGCTCTGATAGAGGACCTGCTGCCTCCTTCGTATTTCTCCTCCACGCTGCTGGGAGTTCAAACCGACCAGCGTGTGCTCAGACAGCTCATAGTGCAGTATCTGCCGAGCCTAGACCAGCTGCTACAAGAGCATGACATTGAGCTCTCTTTAATCACGCTGCACTGGTTCCTCACTGCTTTTGCCAGTGTGGTGGACATCCGTATCCTGCTGCGAATCTGGGACCTGCTTTTCTACGAGGGCTCAGTGGTGCTCTTCCAGGTTACGCTGGGCATGTTGAAGATCAAGGAGGAGGAACTGGTTTCATCTGAGAACTCTGCATCCATCTTTAACACCCTCTCGGACCTGCCCAGTCAATTAGAGGATGGGGCGGCAGTGCTGGGAGAGGCTGTGCGTCTGGCAGGATCTCTGTCTCAGGAAAGCCTggatacacacagacacaagcaTCTTGCCTACATCCTGGCAGAGCAGGCTCAGCTCAACTCCGGAAACTCCCATTCCCTCCACACCAACCTCAACAAGGTGGTTCGCAGACAGAGCCTGCGTAGGAAATCCACCCTGAGCTCGCTTCTCTGGGGGGAAGACGAGGTGGAGGCGCTGAAGgccaaaaacattaaacaaacgGAACTGGTGGCAGCACTGAGAGAAGCTATCAACCGGACCGCAGAGCACTTTCACTGCCTGGACCCCCGCAACTGCAGCACTgATTTGACTCCAGACTATTCTATGGAGAGTCATCAGAGGGATCACGAGAACTTCCTGGTTGTGTCTCGGAATCGTCGAAGACGAGCCAAAGCTTTGCTGGACTTTGAACGGCACGATGATGATGAACTGGGCTTTCGGAAGAATGACATCATCACAATCATCTCACAGAAAGATGAGCACTGCTGGGTTGGAGAGCTGAACGGCCTGAGAGGCTGGTTTCCTGCAAAATTTGTGGAAGTCTTGGATGAACGAAGTAAAGAGTACTCTCTGGCTGGAGATGACACTGTAACGGAGGCAGTGAATGACTTGGTCAGAGGCACGCTGTGTCCAGCTCTTAAGGCCATCTTTCAGCATGGCCTGAAGAAGCCCTCCATACTGGGAGGACCCTGTCACCCCTGGCTTTTCATTGAGGAGGCAGCCAGCAGAGAAGTGGAAAGAGACTTCAACTCTGTCTACTCTAGACTGGTGCTCTGCAAGACATACAGGTTAGATGAAGATGGGAAGGTGCTCACACCTGAAGAGCTTCTATACAGGGCAGTGCAGTCTGTCAACATGAGCCACGACGCTGCACACGTTCAGATGGACATCAAGTTTCGCTCGCTCATCTGTGTGGGCTTAAATGAGCAGGTGCTGCATCTGTGGCTGGAGGTCTTGTGTTCCAGTATGAGTGCTGTGGAGAAATGGTACCATCCCTGGTCCTTCCTGCGCAGTCCTGGCTGGGTTCAGATAAAGTGTGAACTCAGAGTTCTTTCAAAGTTTGCCTTCAGTCTTTCCCAAGACTGTGAGCTGCCTACCAAAAAAGAGGAGAAGGAGCAGAGGCCTCTGAAGGAGGGAGTTCAGGACATGTTGGTGAAGCATCACCTCTTCAGCTGGGATATCGATGGCTAACCTATCACACGCTTCCTGTGAGCTGCAAACACCTAGACCAAATCACTCTCCATCTGCAGAAAAACAGGGATCACGCGTGAAATTCATGTTCATTCGTTGTACAGCTTTATGTCACATGGCTGAAAtggtgagtgtttgtgtgtctcgGCACAATAGTTTCACTTTTTGTGACTCTTACAAGAGTCCGTCTGTACAAAGGAGGAGTTCTTTGCCAAGATTTCACACAGAATCAGACTAAGGACTGCCTGAAAGCGCTTCCTCTCCTCCGAAGCTGAATAAATGTTACACCATTTGGGGCACGACTAGAGTGGTCATGAATTAAAGTAGGATTTGCACCCTTTTGTTCATTTACTCTCAAGTAGTCTTGGCTGCTGGTGACATCTGGatagtgggaaagagtccagcTCTTGCGCTCCTGAGGGATTGTCTTGAGCTAATTCAGTGTCTGGAGGATCACATTTGTGTCAGACATGCGCAATTTAAagattaaacacattttcattatcTTCAGACGACTTTCCAAGTATGATTGTTCCCAAAATagcttaataattaaaaaaatatcctgtGGGTACCACCCTCACATCCAGTTACATCCATGGCAGACTAAAAGATGGCCGTTGACAGAGAAACCGATTGACTGCAGTCAGTGTGTTCAGGCCGCAGCATTAAAACAGTTGACTGAATCTGCCTCAACACGAAGGGCACCGCTGATTCAGTGTTGATGGTGTAGCAATGAATCGGCTTTGTGTTACATATTTTGCTATTTCTCATAAACCGTGTATAATAAAGAGAAGACTAGTAtttagctgctttttttttttgagatagAAGTGAAACAGAAGCAGGTCCAGTGCCACTCTGAAGAAGAGCTGTGTGTGTCTTCTCTGCGAAAGCCTGCAGTGGCACAATTAGATGTTTgagtaaatgaaagaaaaagggtTCATTTTATAGTTCTTGTAATTGGTAGACATGGTTGTTTTGAACCAAAAATTAGTCTGTAATGGTTGAGCATGACCAAACTCGCAGGGCTTTAGATCATATCCACGATCACTGATTATATGtacctaaataaaaatctatatctgTAAAAA

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29090 lncRNA downstream 187778 12339702 ~ 12342331 (-) False LOC122342093
XR_006248508.1 lncRNA downstream 234686 12294140 ~ 12295423 (-) True LOC122332655
XR_006250458.1 lncRNA downstream 259173 12267862 ~ 12270936 (-) False LOC122341243
XR_006250459.1 lncRNA downstream 259175 12267862 ~ 12270934 (-) False LOC122341243
TU28999 lncRNA downstream 259216 12265845 ~ 12270893 (-) True LOC122341243
TU29186 lncRNA upstream 149458 12689620 ~ 12691332 (-) False cacna1aa
TU29337 lncRNA upstream 324148 12864310 ~ 12886954 (-) False G19677
TU29341 lncRNA upstream 324148 12864310 ~ 12886207 (-) False G19677
TU29346 lncRNA upstream 324148 12864310 ~ 12865162 (-) True G19677
TU29260 lncRNA upstream 360619 12900781 ~ 12902910 (-) True G19672
XM_043235148.1 mRNA downstream 8322 12515150 ~ 12521787 (-) True si:dkey-283b1.7
XM_043235147.1 mRNA downstream 12046 12515150 ~ 12518063 (-) False si:dkey-283b1.7
XM_043235935.1 mRNA downstream 15314 12512603 ~ 12514795 (-) True rpl23
XM_043235934.1 mRNA downstream 17644 12510609 ~ 12512465 (-) True ccdc103
XM_043235933.1 mRNA downstream 19602 12509191 ~ 12510507 (-) True LOC122342135
XM_043225878.1 mRNA upstream 30866 12571028 ~ 12661848 (-) False LOC122329559
XM_043225869.1 mRNA upstream 30866 12571028 ~ 12661743 (-) False LOC122329559
XM_043225865.1 mRNA upstream 30866 12571028 ~ 12656834 (-) False LOC122329559
XM_043225857.1 mRNA upstream 30866 12571028 ~ 12656834 (-) True LOC122329559
XM_043228204.1 mRNA upstream 141828 12681990 ~ 12763090 (-) True cacna1aa
XR_006250490.1 other downstream 609342 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 667146 11853748 ~ 11862963 (-) True G19383
TU28829 other downstream 802134 11715722 ~ 11727975 (-) False limd2
TU29176 other upstream 82621 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 440925 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 447188 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 465834 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 506879 13047041 ~ 13047494 (-) True G19700

Expression Profile