RNA id: XM_043235595.1


Basic Information

Item Value
RNA id XM_043235595.1
length 5640
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122341903
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23310836 ~ 23319832 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTCTTGCACGGGCCGCTGTGTTCGAGGCGCGCGCGTGTTTGTTTGGTTCACTCCTCCACGGCGCAGGATCTGTCCATCGCTTCCGCGGAAGAACCCGTCTCTGCTGTCCCACTAAAGATGGAGCTGTCTGCGGCGGGGGACCGAGTGTTTGCCGCTGAGGCCATCCTAAAGCGCCGCATCCGTAAGGGACGGATGGAGTACCTAGTGAAATGGAAAGGATGGGCAATAAAGTACAGCACATGGGAACCTGAGGAGAACATCCTTGATGAACGACTCGTTGCAGCATTTGAACAAAAAGAGCGGGAGCAGGAGATGTATGGACCTAAAAAGAGGGGCCCGAAACCTAAAACATTGCTTCTGAAGTCAAGAGCGCAGGTTGCAGAGACTTCCTCACGAGTCCCAGAGTTCAAGCACACTCGTCCCCAGCAGCATTCCAAGCTCCCTCTGCCCTCGGCTGTACCGTCCTATACCCCAACCGCTCCTTCTAACGCTAAACTGCAATCGGGCACCGCTCAACCCAAACTGAAGAAAGATATTCACCGCTGCCATCGCATGGCACGTCGACCCTTGCCCCGCCTAGACCAAACAGTCGGCCCCTCCAATCCTTTTTCTTCCCGTCCGACAGTGAGTCCTTTCTCAGAAACTGTCCGCATTCTCAATCGTAAAGTCAAACCCAGGGAAGTGAAGAAAGGACGGGTCATTCTGAACCTCAAAGTGGTCGACAAGGCTGGGAATGGTGGAGTTGCTAATAGTAGAAGGACGCATGTGCCCTCTGCCCAGCAGTCCCATTTTGGTCGGCAGAAGATTCCTTCCCGAAACAGGGTGATTGGGAAAAACAGGCGATTTGGAGAGGTGTCCTACCGAGGAATCCAGCCCCCTATTAGAAGTTCTGGGTTTCCTGTTTTCGGAAAACTCTTTGATTCTCACTCCCTGAAAAATGCAGAGAATCAGACTCAAAGCGGAGAGAGTCGTAATAACACAACAAACAATCTCTCTTCCTCCCAAAGTTCAAAGCTGGACGCATCCAAAAGTCAGACTCTTGATGGACTGCCTCCATCAAACTCGAGCTCTGAAGTTTCTGACGGCGAACCACCCTCCCCACAACAAACCCAATCCCAGCATTCCTCATTGCCACCCAAAGCCTCCGCAAGCAAGTCCCAAGATCCTGCCCTTCACAAACTCAGCGCCCAACCTGTGGCATCCAAAAACAGCTCGGGTCCTTCTGCTCTTCCATCTTCTCCTATGTTTTCCTCATCATCCTCTGCCTCGTCATCCTCTGAAGACAACGAACACATCTTGGACCTTTCCGTACCTCATGAAATGGACAGGCGATCACGACGACGCCATCCCTTCTCTGGCCGCCATCCGCTAAAGGTCCCAGAGGTGCCCGTGTCCGAGGAACCGtcggaggaagaggaagattTGGACTGGCATCCTGACATGAGCTCCCGGTGTGCCAATGTGGTTGTCACGGACATCACAGCTAACCTTTTCACCGTCACGATCAAGGAGTTCTGTCATCCACCATCCGCTACTCCTCCTCCCTGCTACCCCAAAAATACATCAGCTCAACATGACACAAAACAGCCAAAGCACCACCCCAACAAAACATGAGTGCGGACACCACAGATACTGCATCTTCCTGCCTTCAGAAGGGATTTTAGGAGGTTTGTTAGTAATTTGTTTACAGTTTCTGCTGCCCGGTGCTCATGTGAGTCTTTAAGAGATGTGGGCAAGCTGTCCACTCTACAACACTGTGCCATGACTTTTATTACCATGAAAGAATGTCTCTTGACTCACTGTGTTTAATCTGAACACATGGACCTTTCTAAAGATGTATCTCTCAACAATGGCTTCTTTAAAGATGTGCCAAGCAACTTCCTGTATGGTATTTATTCCATATATATTATATCCTTACTCACTGGTTTGTATgtgtacactactgttcaaaagtttggtgcTGGTAAggtttttgtatagtttttttttttttttgcaagtacAAACAGTATTCTCAAATCTTATTAGattctattttaacattttaaatttatatatttctatgatGGCAGATGTGACTTCAGCAGCTATTACtgcagtcacatgatccttaagaaatcattctaatttgagCTCAAGAAATATTCCTTTTTCATATGATTGGTAAAAATGGTTGTGGcgcaatatttttttgtagaaacttGAATTTTCATAAAGTTACAGTGTACTTGTATTTCAACAATTTAGTGCatcctttttctttaaaaaaattaaactatagTGATTCTAAGCTTTTGAACAGCAGTATAAAATATGAACCAAGTATTATCTGCATCTTCATACTCAGTTCCATACTGGATTCTATTTACTGTGgcattttcagttatttctgtgaGTGAATGTATTATGTATAGCATCAATAGCTTTCAATTGTGCTTGTGCTGTAAACCACAACTGGGGCCTCAATTTAAGAACTCTTTAGTaatgtaaaagtatattttagggtctaaatttatttaattaatagtaatagtcAACAGGGCAATTTATTGATGAAATTACCTGCAGTAATTGTTGAATATTCAAaaggaaatgaactaaattgTCATTAGGACAGCAGAATGCAGTTTCTTTGCttgtaagaaatatttatataaacaaatagaaAAGGTTGTTGCGCCAAACACTCATCCAAACACTCAGTCCGGTAGACCATAAGATGCATAGATGCAAAAAATGTGAGTGTGGATCTTTTGTGTCTAAGAAATATTTATAGCCATAAAACTTTCTCAGTTCACCCACCAGTTCGTTCTGGAAcctggttatttttatttatagttaggCTTCGGCAAATGGCAGGACTCCTAACACAAACACCTCCACCTTTAAGCATTTCCATTTCTTATAGCCAGCACCTTCATAATGAGGCAGAATAACAACATCTGTGGTCAACAGCTCAACCATTTGTGTCAAACTTGTATGTTTTACcaagtgtttatagtgctgtccTGCTCACTGTCCCTTTTCGCCAAGGTTTCTGTTAATAGTTAGAAATACTCAGGTGAGAGGAGTAGAGAGAATGAAGAACAGGAGGTTTTGTTGTTGCTAAGCTGAAATGCAGATTTAATGCTCAATGTTGAGGAACCTAAGCCTGCTCCTGTGCTTTTTCTAGATTTCCCCCAATCCATTTATCTGGAATATTACCTGTTATTTAATGACTAGTGTATTTatggtaaaaaatatatatatatttatgttttcctttttaaagacAAGTTGGTTCAATTTAAGCTATTTTGCTCTATTGTAGAAGAGACTCGATATTTGTGCTGTAAAAAGCTATGAGGTCAAATGAAGTCCATAAGATCTAGCGCTTTATCTCTCGATTTCAGTTCAAACAGACATGTCGCCTAGTTGTCACTCACAAGTATCATCCTGCTCTCTCTTTATCGACAGGGATATATAAATCTCAGCAGAGAGAGTGTGGAGTCTGCGACTTTGAATCCGGAGAAAGAGTATTTGCTTAGACTTTGCCGAAGAGCCTTCTGGGAAAAGCGAGCTTTTGATCTAATCCTGATGTGGTTGGAACAGTCTCTACCCTCCAGTTAGGCTTTAATGAGAAGTGAAGTTTAAACCCCATGGGCTTGGGTCTTGATGCAAGCCAGTGTCAGGTTTTGAATAAGAAGAGGCACAAGCGAAACACACTAGCCTGATAAAGTGGATGGTGATATCATTGATATGGAAACATTTGCTGTGGCCAAACACAATGCTTAGGGTCATAAAATGAGCTCATAGTGTAGTTCCCCTTATGTTCTCAGTGTGCCTTGTTCTCAATGTCTTACAAGCCTTCTGTATACCTTATTTTGAAGTCAGGACTTGACTGACCTTAAAAACTAATTGCCAGAAGCGCTACACTAGATTacattaactttaatttatgtgatgttgctatttaaaattcattgtgTAGTCTCATTAATGTGTTAATCGTCATGTGCATTTTTGGTCTGATTCAGAGTAGGTTATAACAACTTATgaacttttgtttatttttagtttcttaTGAAATTCTATTCTTGTCATCAAGATTAAGCTTTCAGTCCTGCTCTCTGCAGCTTACACCAACTTTGTTGGTCCTAAAGCCCTGATATTTTCAGCAAACACTGACTCTTCTGAGCCTTATGGGCTTCCCTTGTAATCCCACTTAACCAGCACTCCAAGACTTGTGCATGGAGAGAGACTGAGAATGAAGATTTCCTCTCAAAATCCCTGTCAGGAGATTGGCTCTGAGTTCAGCGCATCATTCTGTTCATCCCGCTGAATCCCGACTCTTATTATTCCTCCACATCTGCTGACAGTTTAGCTCAAACCTCCACGATGAAGATGTTTTAAGGACACACTCTCTCGTCGACCTGcataaaatggatttttattgtaatggaGTTGTTTGTTCAGCCATATTGTTTGTTTAgccatattcttttttttgtttgttttctttaaatggcAAATTTGAGGGATTGGAAATTCCTCAGCACTTAGAATGCATGTTTTCACGTTTGTGTTATTTAAGAAGATTAAACATCAATGCACTCGTGCCTTTGTTGCAAAGGAAGAGGTTTTGAATATGTAAATACTTTCGAAATGATCagacataattttttattttggtgtgaTTCATTTGAGTGAAGTTTGAATATGTGGCATTCATTTCTTAGTAAGAGCATGCAGCTCTGGTTTCATGTACGTCAGAATGGGCATGACTTTCCCATTACTTCATATACAAAGCATTGTGTTAAACTTTTTGTTACGTTGCCTTGACAAAGCCAATGAAATATACTATACACATTGTTCAAACTACATCCAGCAGACCCATCACTGTCCTTCAGACTGTTCCTTTCTAATGCCACTTACTTGATTTCACAAGATTATTAAATATCCTATAGCTTTTAATGGGAAGTTTCTAACTGTAGTTCTTACGCTACGTCAACCAAACACCTTATAATAGGTGAATATACTTCTAGTGAACCTTCAAACTTTCAAGCCAACATTCAATCACATCTGTAGTGATAGCCGAAGCTTGTAAAGCACACAGAATACGCGCAGATCATTAATGCCCCACACGTTTGAGAATAATCCCTTAGTTCACTGTGTAACTTCTGATCTGTTCTGTGCAGTTTGACATTGATCTGGCTTCATTTGTGATTATGTGTTTGAGACAGAAAGGGAATATATTTTGAATCTCCATTATTATATGTTCTGAGTTATAAACTCCCATCTCGTTGTGATTGTTTTCGCTGTAATGTTGAACCCTGTGTGAACGTTTGACTTTTTTCACCGTCTTGTTAGCCGGTGATGATTACGTGAATGATTCCTGCTTTCAGTGTCCTTTTGATTCGGtcgttttttgttgtaaatatgaatttttatataataacttCATGCTTGATTTTTATTCTGTACTGGCCATAGCAAAAcgataattatttttcattgctttgCTTATGTATTGTGTACAGATTTGTAATTGACAAAGTGTTGAAAATCATGGCAATTTTTGTACCGTCTTTGAAGTAGAAGTGTAGCTAAGCTCACTGACCCTGTTTTAATAAAGGAATTGCATTTGTGATTTTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33501 lncRNA upstream 162218 23100944 ~ 23148618 (+) True G22582
TU33504 lncRNA upstream 193996 23114278 ~ 23116840 (+) True G22584
TU33498 lncRNA upstream 215414 23089473 ~ 23095422 (+) True G22581
TU33443 lncRNA upstream 282331 22940247 ~ 23028505 (+) True G22554
TU33452 lncRNA upstream 404141 22905742 ~ 22906695 (+) False LOC122341356
TU33611 lncRNA downstream 18582 23338414 ~ 23343588 (+) False dnal4a
TU33652 lncRNA downstream 24132 23343964 ~ 23348567 (+) False LOC122341898
XR_006250502.1 lncRNA downstream 76669 23396501 ~ 23400922 (+) True LOC122341922
XR_006250500.1 lncRNA downstream 92981 23412813 ~ 23414909 (+) True LOC122341920
TU33712 lncRNA downstream 110172 23430004 ~ 23431766 (+) False zmp:0000000912
XM_043235617.1 mRNA upstream 10079 23262991 ~ 23300757 (+) True pvalb6
XM_043235599.1 mRNA upstream 78536 23221703 ~ 23232300 (+) True pdgfbb
XM_043235614.1 mRNA upstream 113742 23193030 ~ 23197094 (+) True tmem150b
XM_043235615.1 mRNA upstream 113742 23193030 ~ 23197094 (+) False tmem150b
XM_043235597.1 mRNA upstream 117947 23184848 ~ 23192889 (+) True LOC122341904
XM_043235589.1 mRNA downstream 6765 23326597 ~ 23336485 (+) True LOC122341901
XM_043235619.1 mRNA downstream 18547 23338379 ~ 23343640 (+) True dnal4a
XM_043235580.1 mRNA downstream 25585 23345417 ~ 23361942 (+) False LOC122341898
XM_043235582.1 mRNA downstream 25586 23345418 ~ 23361942 (+) False LOC122341898
XM_043235581.1 mRNA downstream 25842 23345674 ~ 23361942 (+) True LOC122341898
TU33550 other upstream 147120 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 404141 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 763628 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 780776 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1284925 21976509 ~ 22025911 (+) False wnk4b
XR_006250499.1 other downstream 83609 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 516267 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 730407 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 730906 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 775192 24095024 ~ 24097159 (+) True G22958

Expression Profile