RNA id: XM_043235597.1


Basic Information

Item Value
RNA id XM_043235597.1
length 1723
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC122341904
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23184848 ~ 23192889 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaagctttaaatttctgtatatttaaGGCAAATTGAGTGACAGATGCGAAGCCCCGCTATAACGAATTAGCGCCTAATTTCGATTATTTCTGAATGACGCGGTGGTGACGTGATCCATGATGGCGACACCACCTCAGCCCACTCGTTCAAAACGAGCTTTAGAAACCTACAAAGACACCGAAAGAGAAGACTGCGGCGCTGCGTCCATCTGCCGATTTAATGGAGGGATCCGGAGAAGAGTTCATGAAATACCGCTCGCCGCTGGTGTCCCGGTACGCCAGCAAAGAGATGGCATACAACTTTAGCGACAGCAAAAAATTCGTAACATGGAGAAGATTGTGGCTCTACCTCGCTAAGTCCGAAAAGGAATTGGGTCTTCCCATAACTGATGCCCAGGTGAGCGAGATGGAGACTCACTTGCAGGACATTGATTTTGCCATGGCTGCTGTGGAGGAGAGGAAGTTGAGACATGATGTCATGGCTCACGTGCACACGTTCGCTCACTGCTGTCCCACCGCTGCTCCCATCATCCACCTGGGTGCCACTTCCTGTTATGTGGGAGACAATACGgaTCTGATAATGCTGCGTGATGGATTTGATATCCTTCTACCCAAGttgGCTCGTGTCATAGACAGACTGGCGAACTTCGCAGAGAAATACGCTGACTTGCCGACTTTAGGCTTCACCCATTATCAACCAGCTCAGCTGACTACAGTCGGGAAGCGTGCTTGTCTGTGGCTGCAGGATCTGGTGATGGACCTGCGTAATCTTCAGCGTGCAAGAGAGGACCTGCGCTTCCGGGGCGTCAAAGGAACCACGGGCACTCAAGCTAGCTTCCTGCAGCTCTTCCAGGGGGATCACGAGAAGGTGGAGGAGTTGGATGTGAAGGTCACTGAAATGGCTGGTTTTAAAAAATCGTACCTAGTGACGGGTCAGACATACAGTCGTAAGGTGGATATCGACTCACTCAGTGTGCTGGCCAGCCTCGGAGCCACTGTACACAAGATTTGCACTGATATCCGTCTGTTGGCTAATCTGAAAGAGATCGAGGAGCCGTTTGAGAAAGAGCAGATTGGTTCTAGTGCCATGCCGTACAAGAGAAACCCCATGCGTGCGGAGCGCTGCTGTAGTCTCGCTCGTCACCTGATGGCGCTGGTGTCAGACCCTCTGCAGACAGCAGCAGTGCAGTGGCTGGAGAGAACCCTGGACGACAGCGCTAACAGGAGGATCTCATTGCCCGAGTCCTTCCTCACAGCGGACATCATCCTCAGCACTCTGCAGAACATCACTGAAGGACTGGTGGTGTATccgaaggTGATTGAGAGACACATCCGTCATGAGCTACCTTTCATGGCTACTGAGAACATCATCATGGCCATGGTGAAGGCTGGAGGAAACAGACAGGACTGCCATGAGAAGATTCGGGTGCTGTCCCAGCAAGCTGCGGCTGTAGTCAAACAGGAAGGAGGTGATAATGACCTGCTTGCTCGGGTTCAGGCTGATCCGTATTTCTCCCCTATACTAGGACAGCTGGACTCCATACTGGACCCCAAAACCTTCATCGGCCGAGCCCCACAACAGGTTACACGGTTTTTGTCTGAGGAGGTCAGGCCCGTTCTAGAGCCATACAAGAGTAAAATGGACGTCAAGATTGATCTTGAGCTCTGAAACGCACACATACGTGACACATCAGAACAGTATTACAATAAATGGTTTTCAGTA

Function

GO:

id name namespace
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity molecular_function

KEGG:

id description
K01756 purB, ADSL; adenylosuccinate lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33501 lncRNA upstream 36230 23100944 ~ 23148618 (+) True G22582
TU33504 lncRNA upstream 68008 23114278 ~ 23116840 (+) True G22584
TU33498 lncRNA upstream 89426 23089473 ~ 23095422 (+) True G22581
TU33443 lncRNA upstream 156343 22940247 ~ 23028505 (+) True G22554
TU33452 lncRNA upstream 278153 22905742 ~ 22906695 (+) False LOC122341356
TU33611 lncRNA downstream 145525 23338414 ~ 23343588 (+) False dnal4a
TU33652 lncRNA downstream 151075 23343964 ~ 23348567 (+) False LOC122341898
XR_006250502.1 lncRNA downstream 203612 23396501 ~ 23400922 (+) True LOC122341922
XR_006250500.1 lncRNA downstream 219924 23412813 ~ 23414909 (+) True LOC122341920
TU33712 lncRNA downstream 237115 23430004 ~ 23431766 (+) False zmp:0000000912
XM_043235598.1 mRNA upstream 3782 23171604 ~ 23181066 (+) True LOC122341905
XM_043235607.1 mRNA upstream 17604 23164362 ~ 23167244 (+) True atf4b
XM_043235616.1 mRNA upstream 21138 23158219 ~ 23163710 (+) True prr15la
XM_043231035.1 mRNA upstream 49810 23128784 ~ 23135038 (+) True LOC122333434
XM_043235614.1 mRNA downstream 141 23193030 ~ 23197094 (+) True tmem150b
XM_043235615.1 mRNA downstream 141 23193030 ~ 23197094 (+) False tmem150b
XM_043235599.1 mRNA downstream 28814 23221703 ~ 23232300 (+) True pdgfbb
XM_043235617.1 mRNA downstream 70102 23262991 ~ 23300757 (+) True pvalb6
XM_043235595.1 mRNA downstream 117947 23310836 ~ 23319832 (+) False LOC122341903
TU33550 other upstream 21132 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 278153 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 637640 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 654788 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1158937 21976509 ~ 22025911 (+) False wnk4b
XR_006250499.1 other downstream 210552 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 643210 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 857350 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 857849 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 902135 24095024 ~ 24097159 (+) True G22958

Expression Profile