RNA id: XM_043235605.1


Basic Information

Item Value
RNA id XM_043235605.1
length 2452
RNA type mRNA
GC content 0.42
exon number 13
gene id sp100.4
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23415427 ~ 23420974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAAAATAATGATATGCTTTTGTGTGGATGTTTTCTGAGGTTATAGTTTCTTCAGTGGACCGGGTGGCTGCTTTCAGTTTCGATAGCGCGTTAGAGTGGGACGTACACTTCCTGCTGTTCAAATAATGCGAAAGATACCACAGTCTCCTTCGTGAAATGACGCTTTTAAAACATCCAAGAATCAGACTGACTGAAATGAAGCGATGAAACACAGCAGGATGAAGAAACGAAGCTGTAAGAAGAGAAAGCAGACggggtcttcctcccactctAAACATAAGAAGAGGAAACGAGTCGAGAGACAAAACTGCCCTAaaACACTGCCAGCACAAAACAACACTCTGAACAAAAACCAGCTTCCCGTTACGTGTGGCTATAAAGAAGGTGTCCTGTATTTGAAGAAGTTTTATAATAAGCAGAAGTGCATCTTCAGTGAGGAACAGTGGTTCAAGCCCACTGAGTTTGAGAGGTTTGGTATGAAGGAGAAGAACAAAAAGTGGAGGACCAGCATCCTTTGCAGTGGGATTCCACTCCAGAGACTCATAGAGGATGGATTTCTTTCAGctacaacctttaaaaaaagcagagtTCAGGATGCAAAGaaaaATAGAAGTCAAGTGGGTTTGAAAAAACAGGAATCACATGAAAGGATTGAAAACAATCAAGACGACGATgacaataatgatgatgatgatgatgatgatgatgatgatgatgatgaagctACTGACATGGGCGTCTTTGAAGGTCCAGTCCTACCTGTTACCTGTGGTTCTGATTCTGGCATTCTACACAAGTATCGATTTTCCACAGGGCGCTGTGGGAGATGCATAAGAACAGAGAACTTCTGGCTGACGCCTGAGGATTTCATCAAATTGGGCAAACCAGAGGGAACATGGAAGAAAGACATCGTGTCCCACGGAGTGCCTCTTGGGAAGCTTATAacgAAGAGAGCTTTGGAGCCACATGCAGTTAACTGTGATTGTGAGATCTGCCAAGAACCGGATCAGAACCTACTGAATGATGACGTGTGTTTCGAGTGTAATTCTGAGGGAGATCTTGTGTGTTGTGACGAGTGTCCGCGAGCTTTTCATTCGCTCTGTCACATACCGGCTGTACATGGAGACTCATccggAAGCCAATGGAGCTGCACATTTTGCGTGATGAAGACTGCGAAAAGATCTGCTCAGAGGACCCAACAGGATGTTTTGAGCAGTCCAGTCTCTCAGTACACACTGCACTGCCAGTATCTGCTGCTACACCTGCTACctcTTGGTGTGCATGCGTGTGACGTCTACACTGCTGGTGCCCAGGGTCCGGGAGACAGTGAGAACATCTGTGGTCCCATGATGCTGGGCAGAGTGAAGCTGAACCTGGAGAACAACGACTATCAAACAGTGCAAGAGTTTATCAAAGCTATTGAATACGTGTTCCACCACTGCACCGCCAACAGGGATAATGACTTCAGTAGGATGACATCTAGGCTTAAGGAACTGTTTGAAAGCGTCTTTGAGCCCTTGTGATATCACGCTCTAAAAAGCAGTCCTTTGTATAAATACAGTACGACAAATATTTATAGAGCATCACAAAGGCTTTCAGTTGTAAACAATTACTTGCAGTGCATTCAACTCACcgccttttgaaaaaaaaagtttaattccAAGTATATGATGTACATGATGGGTCCAAAACCGATATGTTTTTCgttgttgctgctgttgtttgTGTCTTGCATTGAATGTGGTGAGGTGGGGaatatttattagtattctTCTCATTAAggtaaataaaacagcaatggTTATctcataaaacagaaaaagagaatgtctgttagtgtgtgtgtgtgtttcggcTTTTTAAATATGCCAAAAGTAttacttatgtttttataatcGCCTCTCATTTGATGCTGTCAAAAAATATGGCACTTCCCTGACTAGGTTTTTCTGTGTCAGAAGTGTGTAGGACGGAGATACCAACCAGTAGATACCATTTCTATTCAAGTAATACAgacgtttcttttaaaaatttgttttgcaatttatttctaaTGCCAGTGGCAGGAAATGCGCGCCTTAATgactgtgtcatttttttttctgtgaaacaaagGTTAAATATGTCCGGAATACCtataatgaagaaaaattaatttctgttcCTCTGTAAGGTAGTGATTTTCTATTAGTTTGCCTAGCGGTCAAAATGAGATATCACCAGGGGTCCTGGAAGAAAAAGTCATATGTACCTTAAATATACAGGATGGGGATTCACAAGAAACCATATAGTGAGGTGTTTTCAAGTTGCTTTCCTTTTGTGGAAGAGTACAGCTGTTATCGGTTTGTAACCTTGGGTGAGACTAAGATGAAAAAAAGTGGAGGACCATGCAGCAAACTGTGTATTTCTGTATGGCTGTCTGACCTTCTTTGCGAcgaataaaatctttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250500.1 lncRNA upstream 518 23412813 ~ 23414909 (+) True LOC122341920
XR_006250502.1 lncRNA upstream 14505 23396501 ~ 23400922 (+) True LOC122341922
TU33652 lncRNA upstream 66860 23343964 ~ 23348567 (+) False LOC122341898
TU33611 lncRNA upstream 71839 23338414 ~ 23343588 (+) False dnal4a
TU33501 lncRNA upstream 266809 23100944 ~ 23148618 (+) True G22582
TU33712 lncRNA downstream 9030 23430004 ~ 23431766 (+) False zmp:0000000912
TU33784 lncRNA downstream 142066 23563040 ~ 23563246 (+) True G22754
TU33788 lncRNA downstream 153924 23574898 ~ 23578241 (+) True G22757
TU33791 lncRNA downstream 157502 23578476 ~ 23621654 (+) True G22758
TU33792 lncRNA downstream 157502 23578476 ~ 23646166 (+) False G22758
XM_043234707.1 mRNA upstream 2621 23410619 ~ 23412806 (+) True si:dkey-68o6.8
XM_043235602.1 mRNA upstream 6615 23403441 ~ 23408812 (+) False LOC122341907
XM_043235600.1 mRNA upstream 6616 23403441 ~ 23408811 (+) False LOC122341907
XM_043235611.1 mRNA upstream 14505 23397759 ~ 23400922 (+) True LOC122341912
XM_043234706.1 mRNA upstream 23240 23372660 ~ 23392187 (+) True LOC122341358
XM_043235579.1 mRNA downstream 3647 23424621 ~ 23430402 (+) True zmp:0000000912
XM_043235613.1 mRNA downstream 17424 23438398 ~ 23444074 (+) True slc25a17
XM_043235087.1 mRNA downstream 24012 23444986 ~ 23480291 (+) True mrtfaa
XM_043235508.1 mRNA downstream 161457 23582431 ~ 23587628 (+) True cbx7a
XM_043235549.1 mRNA downstream 215387 23636361 ~ 23644540 (+) True st13
XR_006250499.1 other upstream 6613 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 251711 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 508732 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 868219 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 885367 22528989 ~ 22530060 (+) True G22344
unassigned_transcript_294 other downstream 415125 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 629265 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 629764 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 674050 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 1013081 24434055 ~ 24439463 (+) True G22996

Expression Profile