RNA id: XM_043235607.1


Basic Information

Item Value
RNA id XM_043235607.1
length 1991
RNA type mRNA
GC content 0.47
exon number 3
gene id atf4b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23164362 ~ 23167244 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGCTAGAGCTCTTCTCGTctcagctgatttttttttgttgacaacCGAGTGCTTGTGCTCTTCGCCGAAATGGCCGTGTGATCTGCAGCCTGTAGACAGCGCGCAAACTCCTCAGTGCATCAACATAGTGCACTGGCTCAGTACATTTATTCCAAAATGGCGTCCCTTGTGGCAACTCTGACCTTTGCTGTACCTGACAGCACGAAATTATTCAAATTCTCAGTAGAAGACTCTCTGATTCCACTTGAAATAGACAGCCATGTCTTTGATGAGCTCACGGTTTGGCCCGGACGATATGGAGGTCCTTCTCTGGGACCCATCATCACCGATGGCTGACCCTCTGGGGTCCTTCCTAGATAAAGATGAGGAGGTTCTTCCTCTCAGAGGCGCTGAATCGCCCCTCtcatctttctcttcctctccacttccctctctctccccacCCTGCACTCCTCCCTCCCTTCAGAGGGGGGAGAAGGCTGGGCTCAATCAGCTGTCCCTGTCCTGGTTCTCCTCAGATGAGCTTTGCCTAGATAACGGTGGTGCAGGCAGTGGTAATGATCATTCATTCAGTGAAATGGATTGGATGACAGAGCGAATTGATCTGAGTGAGTTTGATCTGGAGTCATTGATTGACTCCTATGATTCTGAGGATCCACCCAGTTCTCCTGAGGAACTCATTGCTTCTCTGGAGTCACAGATAGACCTGGAGTCCCAGCCTGTAGCTTCTGACAATACCCCTTCACCCCCTCCCCCAGTGTCTGTCCCTGAAATCGATCAACTTTCCAACCTTTCATTCACATTGAATACTCCAGTTTCTACTCCATTCATTCCCTCAACACCCTGTGAAGTGTCAGATCCCTCCTCTGTAGTTCCTGAGCCCCAGGCTGAGCTCGAGATAAAGTCTGAACCGGCCTCCCCAGTCCCATCCCCTTCCATCCTTCCACCCGAGTCCCCTACTGACACCCTTGAGCTTGGTTGCGAGGTGGACATAGCTGAAGTTCAAAGTCCAACCCCCGTTGAGATGCGGGTGCCCAAAATTGTTCTGTCCCTCTCCCCAACCCGCATCGTTCTTGTGCTTGCTCCCAAAGAGGAGGCTAATGTGATAGCAACCCATCCAGGTGAGGTGGTTGTGGATAATTCACCAAGTCCAGCCTCCCCTGAGCCACAATCCCCAGCCTCTCCCCAATCTCGGTCTTGTAGGGTGAAGCCATACCCTACACCTGATTCTATGCCCACCCAAAATCAGCAATCGGAGTCACCTTCCCTCACAGGAAGAGTGAAGTCATCCAGTGGCCCAAAGGTTGTGGTTGagaagaagaagctgaagaAAATGGAGCAGAACAAGACTGCGGCGACCCGTTATCGTCAAAAGAAGCGTGCAGAGCAGGAAGCCCTCCTGTCAGAGTGTGCTGTTTTAGAGGAGAAAAATCAAGAGCTGGAAGAAAAAGCAGAATCGCTCACTAAAGAGATTCAGTATCTGAAAGAGCTAATGGATGAAGTCAAGAAGGCAAGAGAGAGCAGGAAGTCGTAGAAACAAATGGACACAGAGGCTTGAAGCTGGGTGAAATGGACAGTTTCAGCATAGCCTGAAGTGCAGAAAATAGGGATGTTGGTCCTAAAAGAAAGTATTTATTGAAGGGTTgaataaataactgttttggTTCTTCCCCTAATGACTTGGTAGAATAAGCTTCCTTTTTAGCATGTTGGCTATCAGTAAAGCCTGATATACTTTtgtaagtgtgtttttattttatcatcttGTGTATTAATGTGCACAGTATTTTATATAGCAGTGCATTGTGTAGTTGgttgtctttcagtttcttAATTGAAATTGTGCTGTATAAACGCTCAATACTTTAGTTCTGTCTTTGTTCATAGAAATGTTATAGTGTGCTTTTATTACCTGTTGACTTTCTATGGGCCTTTCACCATTTTTCAACTaacttaaatgttatttgtgtaataaacatttaaaacgaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04374 ATF4, CREB2; cyclic AMP-dependent transcription factor ATF-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33501 lncRNA upstream 15744 23100944 ~ 23148618 (+) True G22582
TU33504 lncRNA upstream 47522 23114278 ~ 23116840 (+) True G22584
TU33498 lncRNA upstream 68940 23089473 ~ 23095422 (+) True G22581
TU33443 lncRNA upstream 135857 22940247 ~ 23028505 (+) True G22554
TU33452 lncRNA upstream 257667 22905742 ~ 22906695 (+) False LOC122341356
TU33611 lncRNA downstream 171170 23338414 ~ 23343588 (+) False dnal4a
TU33652 lncRNA downstream 176720 23343964 ~ 23348567 (+) False LOC122341898
XR_006250502.1 lncRNA downstream 229257 23396501 ~ 23400922 (+) True LOC122341922
XR_006250500.1 lncRNA downstream 245569 23412813 ~ 23414909 (+) True LOC122341920
TU33712 lncRNA downstream 262760 23430004 ~ 23431766 (+) False zmp:0000000912
XM_043235616.1 mRNA upstream 652 23158219 ~ 23163710 (+) True prr15la
XM_043231035.1 mRNA upstream 29324 23128784 ~ 23135038 (+) True LOC122333434
XM_043231044.1 mRNA upstream 29324 23128785 ~ 23135038 (+) False LOC122333434
XM_043231053.1 mRNA upstream 29324 23128785 ~ 23135038 (+) False LOC122333434
XM_043235459.1 mRNA upstream 50264 23103757 ~ 23114098 (+) True copz2
XM_043235598.1 mRNA downstream 4360 23171604 ~ 23181066 (+) True LOC122341905
XM_043235597.1 mRNA downstream 17604 23184848 ~ 23192889 (+) True LOC122341904
XM_043235614.1 mRNA downstream 25786 23193030 ~ 23197094 (+) True tmem150b
XM_043235615.1 mRNA downstream 25786 23193030 ~ 23197094 (+) False tmem150b
XM_043235599.1 mRNA downstream 54459 23221703 ~ 23232300 (+) True pdgfbb
TU33550 other upstream 646 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 257667 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 617154 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 634302 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1138451 21976509 ~ 22025911 (+) False wnk4b
XR_006250499.1 other downstream 236197 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 668855 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 882995 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 883494 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 927780 24095024 ~ 24097159 (+) True G22958

Expression Profile