RNA id: XM_043235611.1


Basic Information

Item Value
RNA id XM_043235611.1
length 1622
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC122341912
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23397759 ~ 23400922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACTAGACTAGAATCTAGTCTGATGGGAGTGTTTCATTTAGTTTCTCTTTAGTGTTGTGGTGGTTTGAAGTGCAGCCAGGttcatttctgtcttttacAGGTACCCAAAAGAGATGGATGGTAAGTCATCCATAGATTTAGAGCAGGATTCGGACAGCTCTTCAGGATCTGACTGGATGagtgaaatggaaaaaagtaaaggAAGACAAGGAGGAAAAAGAAAGATTAGGGAACAAGATGACAAGGAGAAGGAAACGTATTCCAACAAGAAGATAAGCgctagaagtaaaagcaatacTGGCCTAATCAAAGTCTTTCAGGAGGCCAGAAATAAGATAAAACTAACTGTCCGTTGCGGAAAAATGACTGGtcttatatacaaaaaaaagtatgagaATGGAGAGaagtgtgttttatgtaaaGGGCATTGGTTTACACCCAGACAGTTTGAGAAGTTTGGAGGAAAAGGAAATAACAAGAAGTGGAAGAGCAGCATCTATTACAAGTCATCAAACGGCCTTCAACAAGTGCAGTTagagaaactcatacagAATAGGTGTCTGCCACAGTATGGATATCTGAGGAAGTCATCTAGACAGACAGATGTGTGTGGTGCATACTCATCACCTCAGCAAAGTGTGACACGAAGGAAGACACTCAACCACacaaaatATTTCACTGGCAGTAAGGAAAGTAATCgcagaaataataatgaaatgcccGCGTGTGGAAATGAAGAGGACACAGTGAGGAAGAGAACAATTCAGCTGGACAGTTCTTCAGATGAGTCCATATCTGTTGCTGAAAGAGTCAAACTGAACAGGAGGGAACCTGTGAATTCAATTGAAACTGTTggtaaaaaaatcacagaacaTATAGGATCTACTTCAAATAATAGAGATTCACCTGCACCTCCCACTGAAGCTCCAGGACCTGCTGTATCTTCTGTTGTAGAGGAGCCTGATCAGACCACAGATGAAGAAGCAGCTCCTCAGATGAACTTCAGTGGTTCTCCTGTTGATGCTCCAGAACCTGCTGTATCTTCTGATGTAGAGGAGCCTGATCAGACCACGGATGAAGAAGCAGCTCCTCAGATGAACTTCAGTGGTTCTCCTGCTGAATGGCAGAAACCTGTCACTTCTGAAGGAACTGAGAAGACAGACCAGACGCAGCTGTTTGAATTTCTGGCAAACCAGTTTAATACCATTAACAACACCCTGAAATCAATTGATTTGTCTTTGAAGAAGCTGGTGGAGAAGGAATCACAAAACACACTGCCTCAATACATCAGTCTAACTCCTGCTGTCATTGAAAACCTCCAGATTCAGTCCTCAGTCAAGGAGGAGCAAATCACACAAGTTTTAAATCAATGAAGTAGACTTTGACACTGAACAGAGTTAGTACTGAGGAAGCAGGACTGTGATCTGAGAGGTTATGGTTTTAAAGACAGCTTCAAAAACTTGTGGTCTAATTTGAACTTGAACTAGTGGtctaatggtttttaaaaatacatgtaaggTATATCCATAGATATGTGATCCCCCATTTCTTATAAAAGGCCAATTCagaaatggattttaaaaagcaatccCATATTAAATTCTGAATGTTATGCACCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33652 lncRNA upstream 49192 23343964 ~ 23348567 (+) False LOC122341898
TU33611 lncRNA upstream 54171 23338414 ~ 23343588 (+) False dnal4a
TU33501 lncRNA upstream 249141 23100944 ~ 23148618 (+) True G22582
TU33504 lncRNA upstream 280919 23114278 ~ 23116840 (+) True G22584
TU33498 lncRNA upstream 302337 23089473 ~ 23095422 (+) True G22581
XR_006250500.1 lncRNA downstream 11891 23412813 ~ 23414909 (+) True LOC122341920
TU33712 lncRNA downstream 29082 23430004 ~ 23431766 (+) False zmp:0000000912
TU33784 lncRNA downstream 162118 23563040 ~ 23563246 (+) True G22754
TU33788 lncRNA downstream 173976 23574898 ~ 23578241 (+) True G22757
TU33791 lncRNA downstream 177554 23578476 ~ 23621654 (+) True G22758
XM_043234706.1 mRNA upstream 5572 23372660 ~ 23392187 (+) True LOC122341358
XM_043235580.1 mRNA upstream 35817 23345417 ~ 23361942 (+) False LOC122341898
XM_043235582.1 mRNA upstream 35817 23345418 ~ 23361942 (+) False LOC122341898
XM_043235581.1 mRNA upstream 35817 23345674 ~ 23361942 (+) True LOC122341898
XM_043235619.1 mRNA upstream 54119 23338379 ~ 23343640 (+) True dnal4a
XM_043235602.1 mRNA downstream 2519 23403441 ~ 23408812 (+) False LOC122341907
XM_043235600.1 mRNA downstream 2519 23403441 ~ 23408811 (+) False LOC122341907
XM_043234707.1 mRNA downstream 9697 23410619 ~ 23412806 (+) True si:dkey-68o6.8
XM_043235605.1 mRNA downstream 14505 23415427 ~ 23420974 (+) True sp100.4
XM_043235606.1 mRNA downstream 14522 23415444 ~ 23420974 (+) False sp100.4
TU33550 other upstream 234043 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 491064 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 850551 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 867699 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1371848 21976509 ~ 22025911 (+) False wnk4b
XR_006250499.1 other downstream 2519 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 435177 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 649317 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 649816 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 694102 24095024 ~ 24097159 (+) True G22958

Expression Profile