RNA id: XM_043235622.1


Basic Information

Item Value
RNA id XM_043235622.1
length 2560
RNA type mRNA
GC content 0.46
exon number 7
gene id spsb3a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20321945 ~ 20327552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTGTTTACGTCTGTCGTTGAAAGTAGGTCACAGGAAAGTGTGACAGTTAGCTGGTGGACAGAATCCGATCGCTTTTACAGAGACATACATTACAGTGTCATACGAAAACCTTCAGGTATACGAGTCTCCAGCGATCGCAACGGTGCCCCTGAAAGACAGGTGCGGAGGCTCCCGGTTGGCATGTCGAGGCGGAGCAGAAACAGCAGGGCGTGGAGGTACGTATGGAGTGGAATCCGACGGGATGCAGATGCAAGAGCGCTGGTGCTTGCCTCCGAGAATGACGAGTGGGGTTATGATCGCCAGCAGTACAGTGACTCTGATTCTGAAGCCGAGTATCCAGCCATTGTTCCGGCGGTCCCGAGCGCAGTGCCTGTAACGGGAGAGTCATACTGCAGCTGTGATTCACAGATGGAGCTCAGCTGTAACCCTCGGCTCCGGGGTTACACACACTTGCGAGACTGCCACTGCGGAGAAGATGACCAAGACTTTGACTGGGTGTGGGATGAGGGCAGCCGGTCGTCTGCCACGCTGCTGAGCTGTGAGAACAGGAAAGTGAGCTTCCACTCGGAGTACAGCTGTGGAACGGCAGCCATTCGCGGCTCCAAAGAGCTCTCAGAGGGACAGCACTTCTGGGAGATTAAAATGACTTCCCCTGTCTACGGCACAGACATGatggtTGGTATTGGCACATCAGATGTGAATCTGGACAAATACAGACACACATTCTGCAGCCTGCTGGGTAAAGATGAAGACAGCTGGGGTCTGTCATATACAGGTCTGTTACATCATAACGGTGATAAAGTGAGCTTTTCATCACGTTTCGGACAGGGTTCTATTATTGGCATTCATTTGGACACTTGGCACGGCACCCTCACCTTTTATAAAAACCGCAAGTGCATCGGTGTAGCAGCTACAGAGATGAAGAATAAGCGTGTTTTTCCGATGGCGTGCTCCACCGCGGCCAAAAGCAGCATGAAGGTGATTCGCTCGGTCTCGGCTCCCACCTCTCTACAGTACCTGTGTTGCTCACGGCTCCGCAAGCTGCTCCCGTCCGGAGTCGATGCCCTCCGAGTCCTGCCCCTGCCGCCGGGCCTCAGACACCTTCTCCACTCCAAGCTGGGATGGGTGCTAAGCCTGGATCACACGCACATGCACTCGAACACACACAGCCCGCCCGGACCCTCCTCGGGCAGTGACTCTGAGGGCTGCTCCTCAGACCCCGAGGCCTGCCAGCGGAAGCGCTGCCGCTGGACCTGATGCTGCGTGCGCGCATCCATTATGCATCATTATGCACACATCAGAAAAGgtctctacaaaaaaaaaaaaaaaaaaaaaaaaagaaccaacatatataaatatataaacactggaCCCCTGCTGTCAATCACAGTGGTGGATAACAGGACTGGCTGAGTAACTTCAAGGTCAGTCAAGCCTGTTTTACTAGTTGCATCGCTGGTAAATGTTCATCCTTCAAGGCTCTAAAGGTAGTTTGCTCCATCAGGTGACATTCggatatatattacagtatttgtaGTCAGTTTTGTTGTGAACTCCCAGTGGAATGAAGACCATCGGCTCTTCAGACAAAAGCAAGATCTGAACCTCGTGAACCTGTTCTGATGTGGGGAACAATAACATGCCATCATCTGAAGCGCAGACAAACACTCGCACTGTTTGCGTTcgcaaaataaacacaaacgaTACACCCCGAGTGAACTGTACATTTCTCCATTgttgaaaaatgagaaaaaaaatgacctgATCTATTCTGAAGTAATGCATATTCACGTCTCACGGGCCAGTCAGACATCTCAGCACTTTAGAGTGTCACGGTCTGTTCTCTCTTTATGTTTGAACAATCATTGTATGTTTTTACTCTATTCCTGTTTTATCAAACAACTTACCAACACAACAGTGACGTCATGATAAATATCGTCTGCATAAATGTGATTTCACTACCATTACGTTGAAATGGTGAGGAAAAATGCCTGTGTATTTTCACAGCTCTCGTCTCTAGAAATGACTTTGGGCCCTAGTTATTACTCAAAGTGTGTTGATGTGTATCTGAAGAGTTTCTCTGGAAATACCTTGATGCAGTTGTCGAACTGACTGATGCTAACTGAAGTGGAGGTTGATTCAGTGTTCAATCTGTGCAACATCTCTACGTAAGGTTCATATTGAATTCATATGGGGTTTATATTGCAGATTTTGTaattcattgtttaaaaaaaaaaaaaaaaaaaaaaaagtcattttttttggttatgcataaagcacttttttgcgcttattgtatgtatgtatgtagaaATATATACAGGTCCCTATGCTGTGTTCTACACGTATTGTATGTCATAAGCGCTCATGAGAGCTAATTCTCTCATTCACTGTCTTCTCTCTTCCTTCTTTCGCTTTTACTCCATACATTAAGCATGGCCTTTTATATGAGTCAAgaaaaaataaggaaaattatatatgcattaaaaaggGGCTGAatatggttttgtttgttgttctttttgagATCTtaataaaggttccaaaaatTCCAAAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10345 SPSB3, SSB3; SPRY domain-containing SOCS box protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32185 lncRNA upstream 7801 20230015 ~ 20314144 (+) False G21655
TU32184 lncRNA upstream 7801 20313295 ~ 20314144 (+) True G21655
XR_006250526.1 lncRNA upstream 136419 20173694 ~ 20185526 (+) True LOC122342124
TU32179 lncRNA upstream 148943 20168636 ~ 20173002 (+) True G21652
TU32162 lncRNA upstream 160740 20160436 ~ 20161205 (+) False LOC122341550
TU32192 lncRNA downstream 12339 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA downstream 13520 20341072 ~ 20342296 (+) True G21661
TU32202 lncRNA downstream 66009 20393561 ~ 20393901 (+) True G21669
TU32204 lncRNA downstream 80240 20407792 ~ 20408327 (+) True G21671
TU32232 lncRNA downstream 152779 20480331 ~ 20518038 (+) True G21687
XM_043235443.1 mRNA upstream 1655 20316318 ~ 20320290 (+) True atp6v0ca
XM_043235103.1 mRNA upstream 12485 20296472 ~ 20309460 (+) True lasp1
XM_043235940.1 mRNA upstream 31468 20287163 ~ 20290477 (+) True arl5c
XM_043235199.1 mRNA upstream 37045 20254825 ~ 20284900 (+) False cacnb1
XM_043225682.1 mRNA downstream 604 20328156 ~ 20331230 (+) True mrps34
XM_043229013.1 mRNA downstream 3782 20331334 ~ 20334050 (+) False nme3
XM_043229006.1 mRNA downstream 4391 20331943 ~ 20334050 (+) True nme3
XM_043235294.1 mRNA downstream 39893 20367445 ~ 20382139 (+) False cramp1
XM_043235296.1 mRNA downstream 39913 20367465 ~ 20382139 (+) False cramp1
unassigned_transcript_291 other upstream 7614 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 133862 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 134747 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 214109 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 253944 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 968150 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1310191 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1647700 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1648957 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 2201437 22528989 ~ 22530060 (+) True G22344

Expression Profile