RNA id: XM_043235629.1


Basic Information

Item Value
RNA id XM_043235629.1
length 2517
RNA type mRNA
GC content 0.46
exon number 10
gene id snrnp70
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11754248 ~ 11762534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCCATTTTAAGAAAGGAACGGCTCGTTCAGCTTGGCGAGACTACACGTTGTGTATTGTGTGGACAgaattacatgcaaaatattgAAGAGATTTAAGAAGTTCTAGCACAAAGAGTTCCTACTGACAGACGAAGAGGGGTTTTTGCGCTAAACTCGGAGGTTTCGTCGGAACCGAATGAGAAGCTGAGGTGAACAATGACTCAGTTTCTTCCCCCGAACCTGCTGGCATTGTTTGCCCCGCGGGACCCGATACCTTTCCTGCCTCAACTGGAGAAGCTTCCCCATGAGAAACATCACAACCAACCGTACTGCGGGATTGCCCCTTTCATCCGGCATTTTGAGGACCCCAGAGATGCTCCTCCACCCACAAGAGCAGAGACGCGGGAGGAGAGGTTGGAGAGAAAGAGAAGGGAGAAAATGGAAAGGAGGCAAGTTGTGGTGGAAGCAGAACTAAAACAATGGGACCCACACAATGATCCTAATGCTCAAGGAGACGCGTTTAAGACTTTGTTTGTGGCTCGAATTAATTATGACACCACGGAATCCAAACTACGGCGTGAGTTTGAAGTTTATGGTCCTATCAAACGGATCTATATTGTGTACAACAAGAAAACTGGAAAACCAAGAGGCTATGCATTCATTGAATACGAACACGAAAGAGACATGCACTCTGCCTATAAGCACGCAGATGGCAAAAAGATTGATGGACGTAGAGTGCTTGTTGATGTTGAAAGGGGACGAACGGTCAAGGGATGGCGCCCCAGGAGACTTgGTGGAGGTCTTGGTGGTACAAGGCGAGGAGGGGCGGATGTCAACATCAAGCACTCTGGGAGAGATGACACTTCCCGCTATGATGACCGGCCAATTGGAAGTGACCGCGATCGGGATCGTGAACGCAGGGATCGCAGccgggaaagagagagagaaagggaccGTGGTGAGCGCCGCCGTTCTCGATCCAGAGAGAGACGCAGACGCACCAGGTCTCGTGAGCGAGAAAGGGGCCTCGCGGCTCCAGGGGAGGAGGCAGGAGCTGGTGGCCGGCGCCGGGAAAGGGAAAGAGACCGAGTTGCTGCTGGAGACAGCCGAGAGAGGAGTAGAGAccgagacagagaaagagaccgCAAGAGGAGAAGCAGGAGCAGGgatagaaagagagacagagagagagggaagggtGCTGATGGAGGAGAAGAAGGCATGGGTGGGCTTGCTGATGGCATAATGCCCGAAGGAGGTGATAGAGGTATGGAGGACCCCTTGGGTGGAGAGCCAGGAAGAGGGGAGGAAGGAGGGCCTGAAGGAGAGGATAGAGGACGGGATCGAGACAAAGACAGGGAGAGAGATCGTGACAGGAAGCGTAGCCACAGAGATaaagatagagacagagatcgGGAAAGAAGGCGAGACAGGGATAGAGATCGCGAACACAAGCGTGACCGGGGCGATCGTGACCGTGGGGAGCGCAGGGAAGACAGACATGTGTCCTCCTCAGGAGATCAGGAAGGTTTGGGTAACGGAGGTGAAGAGGGTGAAGAGCAGTTACCACCACAATCAGAAGAAGGCTCACAGGAtgggatgaggatgatgatgatggatcAGGATTCCATACAGTCAGGAGAGGGCTATGCCTCCAATGAGAATGGATACAGGATGGAGGCCCAGGGTGATGAATACTGAACTTGCCGCCATTGTGTGGATGATCCATGGTCATCCGGTTATAATGTTGAATGGATTCACAAATATCCTCAATCATTATTTAATGCCTCCACCCTTTGCTTGCACTATGTCCACAGTGTGTAAGTATTATACTGTACAACCAACAGCTATGATGGAGAGAGCTTAGTGTCTCCCTGGTAAGAAGCAtccttttgttaaaaataaagattatgtagtttaactgtgatttattattgtggggttttttttttttttttgctttttttgagaCCAGTTTTTATTTGTGGGGCTTGCTTCACTTAACAACTAGcctttataatacattttgaattccCTGTCCGACATCAACTCCTTATCAAGTGACTGCATTGCTAGGAAGTGATCTCTCTTGACTGAGGCACTGTGTTTTATTACAGTGtactttttattcagtaagggtaACTGTCAGATCAAATGATATGGATTGTTTAGTACCGTTATGACCATTTTCATAGATGTTCGTTGATTACAAGAGTATTTGCTTGATGGTTTGAAGCGTTATCTGtacaatgttcatttttttatctgCCCCTATTTCTCTGTAACTTTATTCTATCTTTTGTCTTGtacattttgtgttatttgGTTCAATATGTGGATCGTTTGCAAATTGTACATTGGCCCCTAATTTTACTGAAATAACAGGAAGCAAACATTgacaagtttttttaaataggaatGTATGCATTGGGTTAAAAAATCGCtcttattatagttttttttttttttttttaagcgtctCTGGTCTTATTGGTTCTGCTTTTCATTCTtgaataaacactttttattgccAAA

Function

GO:

id name namespace
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28582 lncRNA upstream 34669 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 35476 11715731 ~ 11718772 (+) True G19184
TU28491 lncRNA upstream 312910 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 317051 11436944 ~ 11437197 (+) True G19123
TU28233 lncRNA upstream 373458 11380273 ~ 11380790 (+) True G18946
XR_006249757.1 lncRNA downstream 72238 11834772 ~ 11835253 (+) True LOC122338225
TU28625 lncRNA downstream 129369 11891903 ~ 11893656 (+) False syt5a
TU28622 lncRNA downstream 205114 11967648 ~ 11974006 (+) True G19208
TU28679 lncRNA downstream 280350 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 310185 12072719 ~ 12073073 (+) True G19255
XM_043235535.1 mRNA upstream 4320 11740279 ~ 11749928 (+) True strada
XM_043235536.1 mRNA upstream 4320 11740279 ~ 11749928 (+) False strada
XM_043235537.1 mRNA upstream 4320 11740811 ~ 11749928 (+) False strada
XM_043234588.1 mRNA upstream 108805 11640702 ~ 11645443 (+) True dcaf7
XM_043234596.1 mRNA upstream 108805 11640702 ~ 11645443 (+) False dcaf7
XM_043235632.1 mRNA downstream 138 11762672 ~ 11767501 (+) True lin7b
XM_043235630.1 mRNA downstream 5354 11767888 ~ 11772504 (+) True zgc:193811
XM_043235631.1 mRNA downstream 5549 11768083 ~ 11772504 (+) False zgc:193811
XM_043233830.1 mRNA downstream 10666 11773200 ~ 11825434 (+) False kcnc3a
XM_043233832.1 mRNA downstream 10666 11773200 ~ 11825434 (+) False kcnc3a
TU28236 other upstream 384496 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 418423 11333759 ~ 11335825 (+) True LOC122331261
XR_006250543.1 other upstream 591805 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 972395 10752759 ~ 10781853 (+) False kcna7
XR_006249731.1 other downstream 10667 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 10667 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 10667 11773201 ~ 11833924 (+) False kcnc3a
TU28690 other downstream 330069 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 540830 12303364 ~ 12312990 (+) False nbr1b

Expression Profile