RNA id: XM_043235650.1


Basic Information

Item Value
RNA id XM_043235650.1
length 1870
RNA type mRNA
GC content 0.47
exon number 3
gene id si:ch211-237i5.4
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22344662 ~ 22347767 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAAATCTGACTGTTGTTACTGACTAAGAGAAccacatttttctttatatttagtGGAGGAAAGAGATAAAGACTCGATGAATTCACTGAATGTACTAGTAGTAGTACAGTTTTAATATTCCATTGACAAAGACAGGATCCCGTTCCTTTCCAGGAGAACGCTGAGGATCCGCTGACCGCCGCATGCAGAGTTTGGGCGCTCTGCAGAGCTCCTGTTAGCTCTCTTGAAGCTGCCGCCGCACCATGTCGCTATCCATCGCGTTGTTTTTACTCTTTCTGTCTCCGTCGAGGAGCTCGAGACTGTGTAGTCACCTTTGCCGGTGCTATGAACATTCGGACCTGGTTGACTGCCACGCCAGAGGTCTGGAGGACATCCCGCGTGGGCTTCCCCACGGCACCTGGCTCCTGGACCTGAGCGGAAACAAACTCAAGGAGATCCGGAGCCGAGCTTTTGCTGGACTTTGGTCTTTGCGCATTCTAGTGCTCTCAGACAGCAGCATCCAGGTTCTTCAAACACAGGCCTTCTTCTCACTGTCCTTCCTGGAGAAGCTAGACATGAGCCGTAATAACTTCACTCAGATCCCTCCTAACTTCTCAGAGAGCCTGTCTTCCCTGCGCGATCTACGTCTGGACCACAACGCACTGGCGCTATTGAAAGCTCCAGGTCTTGAGCATCTGGAGAACCTCGAGAAGCTGGACCTCAGCCACAATCGCATCCGATCTCTCGAGCCAGGTGCGTTCCGTGGCCTGTCCCGCCTGCGCTACCTTTACCTCCAAGGGAACCTCCTGGGTGTCGTGCGAGACGGGTCCCTCACCATGATGCCCGTCCTGGAAGTCCTGCTTCTGGGCAACAACAACATCTCTGGGATCGAGGTCAATGCACTAGCGCCGTTGCACAGTCTGTCTCTGTTGGGTTTGGAGAGGAATCATCTGGCGCACCTGAACTTCAAGACGTTCCTGAGCTTGCACATGGCGGCTACGCACCTGCAGTTGGCCGGGAACCCCTGGAACTGTGACTGCGACCTGCACCGTGTCTTCAGCAAGCTGCTCAGCGTGCGGCACCTCCACGTCGACGACTATCGCAACGTAACTTGTCGGGAGCCTTGGCAGCTCGCCGGAGCTTCTTTGGCTTGGGTGGACAGCCAGCTGTGTGTGGCTGAGACCGTTACTGTGTTAGTCATCACCGCTACTGTGATTGTGACCGTGTTTGGTGCCTTGGTCGTGGCGGAGCGAAAACGCAAGAAGCGAAAATACTGGGAACAGAATGAGGGGGAAGAGCAAGAGCAGTAAGGCCATTTTGCATTCTCCTTAGGTCTGTGAAAACACACAAGAGAGCAAATCCCCTAATTCAAGGAAGAAACTGGACTGATATAGAATGAATTGAGTTGATGTGGTGATGGAAACTGAGACTCTTAAGATGCAACTCGCAAACTTTGAACAAAAGTATTTGGTAACTTAGATCCGGTAGAAGGTTTTGTAATCTAGGAAGCATTAGTATTAGAATCTGTTGTAGATAACCAATTAGTTCTGTAGATGTGTTATAGATTAAAATACTGTACGGCAGCTTCATCTCTTCGCCACTtgcaaactaaaagttaaaCCTTCAACTCTTGCGCTACAACGTTctgaaaatgtagaattttttttacattgactaatacttttattcagcaaggatgctttgatcaaaaattacagtaaagacattcaactttcttttcatcaaacaatcatggaataattatacaattatgaATTACCGTTTTCAACATCGATGATGATGTTTCTTAAATCAAATCATCATGTTGATTTCTGTGATTATgttgaaaatacagctttgcatcacataaattacataaaaaatatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33113 lncRNA upstream 8441 22288141 ~ 22336221 (+) False hdac5
TU33114 lncRNA upstream 57617 22269177 ~ 22287045 (+) False hdac5
XR_006250495.1 lncRNA upstream 254731 22035882 ~ 22089931 (+) True LOC122341843
TU33157 lncRNA downstream 163661 22511428 ~ 22640362 (+) True G22340
TU33156 lncRNA downstream 250251 22598018 ~ 22672911 (+) False G22340
TU33382 lncRNA downstream 376277 22724044 ~ 22725888 (+) False hoxb5a
TU33399 lncRNA downstream 417979 22765746 ~ 22766130 (+) False hoxb2a
TU33447 lncRNA downstream 551566 22899333 ~ 22903541 (+) False LOC122341356
XM_043233681.1 mRNA upstream 2126 22336995 ~ 22342536 (+) True lsm12a
XM_043233673.1 mRNA upstream 8435 22291549 ~ 22336227 (+) False hdac5
XM_043231537.1 mRNA downstream 1350 22349117 ~ 22356519 (+) True nags
XM_043231545.1 mRNA downstream 1350 22349117 ~ 22356519 (+) False nags
XM_043229772.1 mRNA downstream 9187 22356954 ~ 22362402 (+) True LOC122332454
XM_043231079.1 mRNA downstream 17509 22365276 ~ 22371672 (+) True LOC122333458
XM_043235455.1 mRNA downstream 26315 22374082 ~ 22382787 (+) True LOC122341813
XR_006248300.1 other upstream 318751 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 367997 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 610535 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 930376 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 2030331 20314260 ~ 20314331 (+) True trnac-gca_3
TU33161 other downstream 181222 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 198391 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 557610 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 810482 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 1055674 23403441 ~ 23408814 (+) True LOC122341907

Expression Profile