RNA id: XM_043235656.1


Basic Information

Item Value
RNA id XM_043235656.1
length 7532
RNA type mRNA
GC content 0.51
exon number 66
gene id col5a3a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9353698 ~ 9400810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGAAACTGAATGAGAGGGACAGAGCTTAGCGGTCTTGGAGGAGAGGAGGATACtcgaagagagagaaaaaaagcctCTCCATCTTGTGCAACTACATACCAGGACCGCAGCAGCActtgcctctctctctctctcacacacacgcttatGGCTTCTGGGTTTTCTCAGTCGTAATCTGCTGGTTGTGTGATAAAGCGCTCGAGTGGAGGTAACGCGTCCCGAACATGAGGCGGCTGAAGGAGACTGCGGTCTGCGTGATCGTGCCGCTGCTTCTCTCTCTGTGCGCCACAACGACAGATGCAGCTAATCTGATCGATGTATTACGGGTCCTGGAGCTGTCTGAAAACATGGAGGGAGTGTCCGCAGAGGCCGGCCTGTGCACCGAAAGAAAGGGCACTTCAGAAACAGACATGGCTTACAGGATAGACAAAAAGATTCAACTCAGTGCCCCAACTAAACAGTTCTTTCCAGATTCTGCTTTCCCTGAAAACTTCTCTCTGATGACCACGGTCAAGGCTAAGAAGAACTCTCAATTCTTCCTGCTGTCTTTGTATGATGAGCAGGGAGTCCAACAGCTGGGGCTGGAACTTGGCCGATCGCCTGTATTCCTCTATGAAGACCACCGAGGCCAGCCAGCTCCAGATCTCTACcccatttttaagaaaatcaaTCTGGCTGATGGGAAATGGCATCGGATAGCCTATAGCGTGGAGGGCAAGTCTGTTACGCTGTACCTGGACTGTAAGAAGCTGCAGACGCTGGAATTGATGCGTGGAGACAGCCCTGTGGTCAGCACAGACGGAGTCGCCGTTTTTGGGACGCGGTTGCTAGATGAGGAAGTATTCGAGGGCGAGATCCAGCAGCTCTTGCTCGTGGATGATCCTCAGGCTGCGGCGGTCTACTGCCAAGATTACATTCCTGATTGTGACAGCCCTTTGCCCTACAGTACCCAGAGTCTGGATCCTGAAGAGGAAGAGAGGCCGATTAAAACACCAGAGGTTGAGTTCAGTGATGACCTTTATGGTGATGAACACAATGAGCTCTTGGTCTCCACAGTGACAATTGGCCCCAATATCACAGACTATGAGATCCTGGAGTAtgagtttaaaaatgactcaaacAGCTTTGAACAGGAGTATGAGGAATATGAGGTTTATGAGGACCGATTTGACCCAGCTCAGAGGGAGAAACCAGACACATGGGATGGAGAGGGCAGGAGATTTGAGAAAGGACAGAAGGGAGAGCCAGCTGTTGTTGAACCAGGCACATATTTTCAAGGACCTCCTGGCCCACCGGGACCAGAAGGTCTTCCAGGAATTCCTGGCATCACAGGTCCCCCGGGACCCAGTGGAGACCCAGGTGATGTGGGTCCTGAGGGACGTCCAGGGCTGCCTGGCGCTGATGGGATACCCGGTCCTCCAGGCACTTTGCTTATGTTACCCttCCAGTATGGAGGAGACTCTCAGAAGGGACCTGTGATATCGGCTCAAGAGGCACAGGCTCAAGCCATCTTACAACAGACCAAACTATCATTGAAGGGCCCTCCAGGTCCATTAGGTCTCACCGGGAGGCCGGGACCAGTGggtctACCAGGTCCCAGTGGACTAAAAGGGGACAGTGGAGAGACTGGGCCTGCGGGCCCACGTGGGTTGCCAGGTCCTGCTGGTCTTAATGGGAAACCAGGGAAAAGGGGTCGATCAGGGGCAGATGGAGGTCGAGGGGCTCCTGGAGAGACGGGAGCAAAGGGTGACAGGGGCTTTGATGGACTACCTGGTCTTCCAGGGAACAAAGGACATAGAGGAGACAGAGGAAAACCAGGACCCCACGGTCCACCTGGAGAGCCTGGTCATAAGGGTTCGGATGGACCTGTTGGGCCAAGAGGGCAACCGGGAGAACCTGGGCTAAGAGGACTTGTGGGGCCAAGAGGGCCACCTGGTCCACCTGGGCAGCAGgGAATTCAAGGCGTTGATGGAGTTCAAGGGGCAAAGGGTAACTTGGGACCACCTGGTGAGCCTGGACCTCCAGGACAACAGGGGAACCCAGGCATACAGgGCTTCCCTGGTCCACAGGGGCCTATAGGCTTGCCAGGAGAGAAGGGCCCTGAAGGCAAACCTGGAATGCAGGGCCTTCCTGGGATTGATGGTCCTCCGGGTCATCCTGGAAGAGAGGGACCCCCTGGGGAGAAGGGACACCAGGGTTTATCAGGAGCACAAGGGCCGGTCGGATATCCCGGGCCCCGTGGAGTCAAGGGCGCAGACGGGGTGAGGGGACTGAAGGGTAGCAAGGGGGAGAAGGGTGAAGATGGTTTCCCAGGGGCCAAGGGTGACATGGGCATCAATGGAGACAGAGGTGATAATGGGGCTCCTGGAAGCCGTGGTGAAGATGGACCAGAAGGGCCGAAGGGTCAATCAGGACCCCTGGGAGAGCCTGGACCTGCGGGAATTGCTGGAGAAAAGGGCAAACTTGGTGTTCCTGGACTGCCTGGATATCCCGGCAGGCAAGGCTCCAAGGGATCAGTGGGCTTTCCTGGAACAGCTGGGGTGGAAGGAGAGAAAGGAAAGAGGGGTTCTGCCGGACAGCCTGGTCCCGATGGTGAAAGAGGTCCAAATGGTGTAcgtggaggaagaggagcaagAGGCCCGACAGGAAAGCCTGGAGCCAAGGGCTCTGCCGGTCATGATGGCCCACAGGGTGCTGTAGGAGAGAGAGGCCCTCAAGGTCCACAAGGACGCGATGGAGAAGCCGGGCCAAAGGGACCAAACGGCCCTCCAGGAAAGGACGGGTTGCCAGGTCATCCAGGCCAACGGGGAGAGCCGGGATTTCAAGGAAAGACTGGACCCCCCGGACCTGCTGGAGTGGTTGGCCCACAGGGAAAAACCGGGGAGACTGGCCCCACTGGTGACAGGGGACATCCGGGTGCCCCAGGACCCCCTGGAGAGCAAGGTCTGCCAGGAGTCACGGGCAAAGAGGGAGCCAAGGGAGATCCAGGACCTGCAGGGCTGTCCGGGAAGAGTGGTCCTGCTGGGCGTCGTGGATTCAGAGGAGAAAGAGGCTTACCTGGCACTTCGGGTACTGGAGGTCTGAAGGGTGGGGAGGGCCCCCCTGGTGTTGCAGGACCAactGGTGCCACAGGAGAAAGAGGACCCGCTGGAACTGCAGGAGCCATTGGTCAGCCTGGTCGTACGGGAGGTGTCGGCCCTTCCGGGCCAATGGGAGAGAAGGGCGAGCCGGGAGAGAAAGGGTCAATTGGTCCTGCTGGGCGAGATGGAGAACAAGGGCCTGTCGGATTACCTGGTCCTGCAGGGTCACCTGGTCCACCTGGAGAGGATGGAGATAAGGGTGAGACAGGAGGACCAGGGCAGAAAGGCAGCAAAGGAGACAAGGGAGAGGGGGGTCCCCCAGGGCCGCCTGGGAGCCAAGGACCTCCTGGACAGCTAGGATCACCAGGTCTGGATGGAGAGCCAGGGCCCCGGGGACAGCAAGGAATGTACGGCCCTAAAGGTGATGAAGGTCTGCGTGGTTTCAAGGGGGCAACCGGACCCCCGGGGTTGCAGggAATGCCAGGACCCCCTGGAGAGAAGGGAGAAAGTGGCCACGTTGGAGCTATGGGCCCTCCAGGACAACATGGCCCGCATGGCCCCCAGGGACCCATTGGGGGAGAGGGTCCTCAGGGCATGCCGGGCGGAGTGGGCCAACCAGGAATTGTTGGAGAAAAGGGTGAGGATGGGGAAGCAGGGAATCCAGGAAATGTGGGTGAAACCGGCCCCCCTGGAGACAAAGGTGAAGTGGGTGAGAAGGGTGATACTGGCCCCCCTGGGGCTGCAGGACCCGCAGGAATCAGAGGCACACCTGGATCAGATGGACCCAAAGGACACCCAGGTCCCCTTGGTTTTCCTGGAGATGCGGGACCCCCTGGAGAGCCAGGTGCTAATGGTATTGACGGTGGGCCAGGAGCTAAAGGGGATAATGGCGAACCTGGCAAAGCTGGACCCCCAGGAGCCTCAGGAGAGCCTGGCCCTCCAGGGCCACCTGGACGGAGGGGTCATACAGGTCCTGAAGGAAAAGAAGGGAAACAGGGAAAAAAGGGGGCAAAGGGTTCTGCAGGTGCTGAGGGTTCAGTGGGAAAAACCGGGCCTGTTGGACCACAGGGACACCCTGGAAACCCTGGTCCAGAGGGATTGCGTGGGATTCCAGGCTCTGCTGGGGAGCAAGGGTTAAATGGGCCCCCTGGGCAAACTGGACCCCCAGGACCTATGGGTCCAGCTGGATTGCCAGGACTGAAAGGAGATCCCGGCATTAAAGGAGACAAGGGTCATGTTGGGCTGATTGGATTGATTGGACCTCCAGGAGATCTGGGAGAGAAAGGAGATCGAGGCCTGCCGGGAAACCAGGGAGTACAAGGCCCTAGAGGAGAtggtGGTACTGGTGGCCCCCCCGGCCCGACTGGTCCACCTGGACCCCCTGGGTTGTCTGGTGCAATAGGTGAGAAAGGATCTAAAGGAGACCAGGGAACCATCGGTGCAAGAGGAGATCCAGGACCTGCTGGTCCACCTGGACTACCTGGCCCACCAGCCACTATGATTGAGCCTCTGCCATACAGAGAGGGACGTAAAAAGCGAAGGAGACACTCAAACCGACAAGGAGCCGGAGCCAGGGCAGAGAgcgaggaagaggaagcggTCCAGCTCAACATGGAGGATTTCCTACAGGCAGACGAGTCTCTAGATGACCCAGAAGGCATGGAAGAGGTGTTTGCGTCACTCAACTCAATGAAAACAGAGGTGGAGCTCATGAGAAAACCACTCGGGACCTTCGAGAGTCCTGCCCGCACATGCAAGGAGCTGATGTTGTGTCATCCAGAATACAAAGATGGTGAATATTGGATTGACCCAAACCAAGGCTGCCATCGAGACTCCATTAAGGTTTTCTGCAACTTCACTGCGGAGGGGGAGACCTGTCTGCACCCTGATAAACGATTTGAAATGGTGAAGCTGGCCGCctggaacaaagaaaaaacgGGCAGTTGGTACAGCCAGTACAGAAAGGGCAAACAGTTCTCCTATATTGACACTGATGGAAATCCAGTTCCTGTAGTCCAGCTGACCTTCCTGAAGCTCCTCAGTGCCACAGCCACGCAGACCTTCACCTATAGCTGCCAGAACTCAGTCGGGTGGTACGATGTGACGAGCCACAGCCATCAACAAGCTCTACGGTTCCGCGGCAGCAACGACGAGGAGATGACGCAAGCCAAATCGCCCTTTATCACAGCACTGTATGATGGTTGTCAGaCACGTAAGGGGCAGGAGAGGACCGTGCTGCAGATTGACTCTCCGCGATCAGAGCTTCTTCCGGTCATAGATGTGGCAGTATCAGACTTTGGAAATAACAACCAGAAGTTTGGCTTTCATGTCGGACCAGTGTGTTTTAATGGCTAACACAGAGCGCCTCATCACAGGACTCACCAGCTAAAGAAACAAGGCCACGAGTGCTATTTATTACGCAATATGTAGACAGTGGGTTGGTGGCATGTTTCCAAATGGCTTTTGAACATCTGATGGTTCTCAAAAAAGCCCAAAAGTCCATGGTCGCTACGCACAGATGCCAACCAGGACAAACTAAGCACATTTATCAAAGGGAAGTCTTTTTTTATCTCCTCTTCCGTCTGTCTTTATACTGTACTCACCTGTGGATTAAATTATGAGGCGTGACCCACTAGAGTTCCCAGAACTGCTCCGgctgaaaaacaaatacatcattTGTCTGTCATCTGCACCACAGACCATTTAAGCCCACAGCATATATGTTGAATTTACAGCCTGCGACTGGGATCTCATATTTGTTTGTCTCATTTGATAGCGatgatttgaaattaatttgccACTTGAGGGATCAGCTTCGACATTGAAGAGTAAATATTTCTCAGACCCATTTTCCTGCCTTGACTGCAATGTGATGCCAACTGAGGCAAAGTTATACCTCTTTACTAGTTTGACAAGAAAATACAACCCTGGTATGTTTGTAATTCCTCGCTTGGATATTCCCTGTCGCATCACACTTGCAGCGTTACTCATCTTTAATCAGCACACGCTCATACataaacaatgttaaataaGGCCCGAGCTTTTCAAAACGCAAAGCAGTTTATGTGCATGACTCAAATGGAGCCcagctgcttattaatatgtAAAGTAGTCCGCTCACTTAAGCTGCTTGTCTTGTTAGCGGGCAGCCTAGTATGTTTGCCTGTCAGTGATCCATGTTTCCATGGTGCTAGAGTATCAACCTTTGTGCCACACAGCTGAATTGCTTCATATATGTATGTggtaatgaatgaaaaatactgTGTTGAGAGAGGGGTGTCATACGATcattacactgaagactgacTAAATTATGCTTCTTTTTTATGCAAACACATTCATATCTGAATTTGTGATTACCGAGTTCCTGATCATCAACCTCAGAGTATTGTgtgctgtgtatgtgtgttgatATGTCTTGTTTGTTGTGTGTTCCCACTGTGGTgctaaagagatttttttttttttgctatgtgTAATGATAATTTGTTGTCTCAGGGGCAGAGGTAGGAAAAGGGAAGACATCTGTGGTGCTTAATACTAATGGAGGGAGataaacactctcagaaaaacGTGCTGTAATATACTGCCAATACGGTGCAAATGTAGTGCTGATATGGATATAATATATTGGCAATTTATAAGGACGTAAACAAAAATGCTGACAGTAAACGCATTTTAcgcaatgtttaaaaaaaaggtccaaATCTGTAAATTGAGCAGCGACGATCAATTTTTACCCTATATTTtctcaattaaaaaatgaaaaaaaaacagagttagtatgtttaatattaatatactgcaaaaatattatttttaaaataagtgtttttgtttacttttccaGTACATGACACACCACATTTTATCAACTTAGTTTTTAACTAAACAAGTTTGGTTGAAAGTGGgagttttttctatttttagtttttaaacattaaattttgtgtcatttattaAACTTAACTTCAACTAAAtttatcttgatttaaaaaaagtttgatatTTGTACTGGGaagcaagacaaaaatacagactAAAACGAGGATGTTATTTGATTTGGAACTGACATGAAGCGAAATATTAAATCTGCACATTAAATTAAGCAcgttttacagcattttaccatttatacagaaatattaaaaccaagaatatttattattttctgtcagAAACTACATGATGTGGAACAACCAAATCTGTTAATCAGACAATCCCAGAATGACTAAATATTAACATGCCTGGTTGCTATGGCTAGGAACTAAATTCAGCCCTGCCCATCCTGACCTCTGAACCCTCCTTTGTATATTGTCTGTGCTACTAATTTTACATAGTGTACAGTTACTCTAAAGTATGAATGATAATACTAATCTGTTGGCTGACAGTTGTATTTGTGAAAAAGTGATGAGCGAATTAAAAATGCCTTTCTTTAAAGGAGACCTTT

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27355 lncRNA upstream 91459 9261970 ~ 9262239 (+) True G18305
TU27353 lncRNA upstream 103068 9250099 ~ 9250630 (+) True G18303
TU27326 lncRNA upstream 168117 9184399 ~ 9185581 (+) True LOC122341719
TU27339 lncRNA upstream 170422 9182540 ~ 9183276 (+) False brd4
TU27303 lncRNA upstream 341520 9011693 ~ 9012178 (+) False pgls
TU27527 lncRNA downstream 12834 9413644 ~ 9414007 (+) True G18425
TU27532 lncRNA downstream 83625 9484435 ~ 9484736 (+) True G18429
TU27551 lncRNA downstream 140890 9541700 ~ 9543366 (+) True G18443
TU27562 lncRNA downstream 169228 9570038 ~ 9570283 (+) True G18453
TU27563 lncRNA downstream 170344 9571154 ~ 9571734 (+) True G18454
XM_043229938.1 mRNA upstream 85968 9260905 ~ 9267730 (+) True zmp:0000001048
XM_043235692.1 mRNA upstream 108041 9214244 ~ 9245657 (+) False camsap3
XM_043235676.1 mRNA downstream 28054 9428864 ~ 9487188 (+) False olfm2a
XM_043235675.1 mRNA downstream 61579 9462389 ~ 9487188 (+) True olfm2a
XM_043235555.1 mRNA downstream 176915 9577725 ~ 9582385 (+) True ppan
XM_043235559.1 mRNA downstream 181564 9582374 ~ 9586218 (+) True p2ry11
XM_043235558.1 mRNA downstream 187200 9588010 ~ 9591291 (+) True eif3g
TU27323 other upstream 168038 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 168117 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 790322 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 293822 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 338986 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 398005 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 625008 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1351949 10752759 ~ 10781853 (+) False kcna7

Expression Profile