RNA id: XM_043235659.1


Basic Information

Item Value
RNA id XM_043235659.1
length 1257
RNA type mRNA
GC content 0.43
exon number 5
gene id ccdc43
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11591600 ~ 11594168 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCCTCGTTATCAGGACCCCAGCCAGGCAAGATGGCGGCGCCCAACCAAATCGCCGGGGAGTTTGAAAACTGGCTGAACGAGCGGCTGGACTCCCTCGAAGTAGACAGAGAAGTTTACGGGGCATATATACTCGGAGTGCTTCAGGAAGAGGAAAACGATGAAGAGCAAAAGGACGCTCTTCAGGGCATTCTGTCCGCTTTTCTGGAAGAAGACACGCTTGAGGAGGTTTGCCAGCAGATCTTAAAACAGTGGAGTGAGTGCAGCAGATCTGCGGCGAAGGGGGCTCAGGCTGATGctgAAGTTCAGGCTATTGCCAGTTTGATAGAAAAGCAGGCACAGATTGTAGTCAAACAGAAGGAGgtgtcagaggaagccaagaAGAGGAAAGAGGCACTTCTGGCACAATACGCTAATGTCACGGATGACGAGGATGAAGATGTTGAGGAAGAGCCAGCTGCCGTGGGAATACCCAGTGACAAATCCCTGTTCAAAAACACCAATGTCGAGGATGTTTTGAACCGCCGCAAACAGCAGCGTGACCAGGCCAGAGAGGATgcacagaagaagaaagagcaggaCAAGATGCAACGCGAGAAAGACAAACTGGCCAAGCAGGAGCGCAAGGACAAAGAAAAGAAACGTACACAGAAGGGAGAACGCAAGAGATAGAAAATAAAGAGCAAGAAAACTTGTTTGTGGACTATAAATACAATACGATGAAAAATACAATGAGACCTCAGCAAACAATGTCCCCACTGACAATGTGTGCATCTATATCCTGTTTTGGGTCTGATATTGCTTATTGAATGATAATGTTGGACCTATTTAGCTATTTTCTTGgcttgtaagaaacaaatggCAAACCAGCAAAGTGAGTGAGAATTGTATTATGACCcgttctttttcttctttttttttctttacaggtGCTAACTGTTGTGCTACTTATTTAAGGGTTAATCTCACACAACCTCTCAAAAACTTGTTCAGGTTGCATTTCAAGTCAAAAGTCATAGAGATATTTTGGTTAAAGACCATTTGCCCTAATTGTCATTACTTTGTTACgtggatattttaaaatataaagtataatcaTAATGAGAATGATGTGGCTATGCAAAACATCTTTACAGTGTTTGTTTGGGTGTATGTGTACATGACTTTTACATACACAATATGGACAAACGTTTTGGGATACCCCCTTCTTTAGAACAGGCAATGtacttcaaaaacattaaaacatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28491 lncRNA upstream 150262 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 154403 11436944 ~ 11437197 (+) True G19123
TU28233 lncRNA upstream 210810 11380273 ~ 11380790 (+) True G18946
TU28274 lncRNA upstream 216199 11371502 ~ 11375401 (+) True G18982
TU28230 lncRNA upstream 220655 11326598 ~ 11370945 (+) False G18945
TU28582 lncRNA downstream 118441 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA downstream 121563 11715731 ~ 11718772 (+) True G19184
XR_006249757.1 lncRNA downstream 240604 11834772 ~ 11835253 (+) True LOC122338225
TU28625 lncRNA downstream 297735 11891903 ~ 11893656 (+) False syt5a
TU28622 lncRNA downstream 373480 11967648 ~ 11974006 (+) True G19208
XM_043235460.1 mRNA upstream 76441 11497653 ~ 11515159 (+) True LOC122341817
XM_043235874.1 mRNA upstream 178331 11408037 ~ 11413269 (+) True clec19a
XM_043228438.1 mRNA upstream 224485 11362983 ~ 11367115 (+) True si:dkey-66i24.8
XM_043228819.1 mRNA upstream 245666 11344269 ~ 11345934 (+) True si:dkey-66i24.7
XM_043228831.1 mRNA upstream 255820 11333741 ~ 11335780 (+) False LOC122331261
XM_043235982.1 mRNA downstream 9506 11603674 ~ 11606177 (+) True fzd2
XM_043235667.1 mRNA downstream 22027 11616195 ~ 11629282 (+) False mylk5
XM_043235666.1 mRNA downstream 22028 11616196 ~ 11629282 (+) True mylk5
XM_043234588.1 mRNA downstream 46534 11640702 ~ 11645443 (+) True dcaf7
XM_043234596.1 mRNA downstream 46534 11640702 ~ 11645443 (+) False dcaf7
TU28236 other upstream 221848 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 255775 11333759 ~ 11335825 (+) True LOC122331261
XR_006250543.1 other upstream 429157 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 809747 10752759 ~ 10781853 (+) False kcna7
XR_006249731.1 other downstream 179033 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 179033 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 179033 11773201 ~ 11833924 (+) False kcnc3a
TU28690 other downstream 498435 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 709196 12303364 ~ 12312990 (+) False nbr1b

Expression Profile