RNA id: XM_043235677.1



Basic Information


Item Value
RNA id XM_043235677.1
length 1106
RNA type mRNA
GC content 0.44
exon number 7
gene id rac2
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10626162 ~ 10638596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gagagagagagagagagagagagagactgaagtAGCAAATCTGTTTCCTGTATTACAACTTAGTTCCTTAACAGTTGTTTTACCGCGGCAGCCGGTAAAAGTTTGTCAAAAGTATCGGAAAATGCAAGCAATAAAGTGTGTGGTGGTCGGAGATGGaGCTGTGGGAAAGACCTGTCTTCTCATCAGCTACACTACCAATGCTTTCCCTGGGGAGTACATTCCCACAGTGTTTGATAACTACTCAGCAAATGTTATGGTGGATAGCAAACCGGTCAACCTGGGCCTTTGGGATACAGCTGGTCAGGAAGACTACGACAGACTGCGGCCACTGTCCTACCCTCAAACGGATGTGTTTCTCATCTGTTTTTCTCTGGTGAGCCCAGCCTCGTTTGAAAACGTCAGAGCCAAGTGGTACCCAGAGGTGAGGCACCACTGCCCTTCCACTCCTATTATTCTGGTCGGCACCAAGCTCGATTTGAGAGATGAGAAGGAGACCATCGAGAAGCTGAAGGAGAAAAAACTGGCACCAATCACTTACCCACAGGGTCTTGCATTGGCCAAAGAAATCGATGCAGTAAAATACCTGGAGTGCTCTGCTCTCACTCAGAGAGGTCTGAAGACAGTGTTTGATGAGGCCATTCGCGCTGTGCTCTGCCCACAGCCCACCAAGGTCAAGAAGAAGGGCTGTGTGCTGCTCTAAGGATGCACGATTTGTCGCTGTAAAGCAGGTACCACAGAAATCCACTGGTTTTCTCCCGAAAATCATCAAGGGAGGCATTTACATTGCGAAAGcctttcttctctttttagCAGAATATAATCTTGAATATGATggcagtgaaatattatttgttctttagaaaatatttaatcatatttttactgATGTATTGTGTTATATTGTGATTGGTTGTGTTGGAGTGTTTTTGTCGGGTACGCAGTCGTTCTCTAGACAGAATAACAGAGATGATCTTTATTTCTGGACCACAAAAAAGTACTTGTTACACAGAGTCGAACTCTGATTATTTTGACCTATGAATCACATCCACATAATACTTGTGTATTCATTTCGGGCAACAATGGccaaaataaactgtttccagaaa

Function


GO:

id name namespace
GO:0032878 regulation of establishment or maintenance of cell polarity biological_process
GO:0001780 neutrophil homeostasis biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0009611 response to wounding biological_process
GO:0002446 neutrophil mediated immunity biological_process
GO:2000391 positive regulation of neutrophil extravasation biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04392 RAC1; Ras-related C3 botulinum toxin substrate 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27967 lncRNA upstream 36343 10589522 ~ 10589819 (+) True G18747
TU27964 lncRNA upstream 47018 10571819 ~ 10579144 (+) True G18744
TU27867 lncRNA upstream 324112 10273974 ~ 10302050 (+) True G18671
TU27728 lncRNA upstream 522701 10034141 ~ 10103461 (+) False G18574
TU27691 lncRNA upstream 714550 9910957 ~ 9911612 (+) True G18549
TU27977 lncRNA downstream 493 10639089 ~ 10639293 (+) True G18757
TU27983 lncRNA downstream 24650 10663246 ~ 10664532 (+) True G18763
TU28016 lncRNA downstream 53294 10691890 ~ 10693750 (+) False LOC122333995
TU28021 lncRNA downstream 61681 10700277 ~ 10700619 (+) True G18792
TU28018 lncRNA downstream 62191 10700787 ~ 10701373 (+) False G18790
XM_043234869.1 mRNA upstream 8581 10607636 ~ 10617581 (+) True fam83fa
XM_043234873.1 mRNA upstream 18653 10595644 ~ 10607509 (+) True grap2a
XM_043235654.1 mRNA upstream 54935 10422746 ~ 10571227 (+) True cacna1ia
XM_043235304.1 mRNA upstream 225117 10397843 ~ 10401045 (+) True LOC122341728
XM_043235302.1 mRNA upstream 231818 10390510 ~ 10394344 (+) True alg1
XM_043228158.1 mRNA downstream 7308 10645904 ~ 10661084 (+) True sstr3
XM_043235903.1 mRNA downstream 33927 10672523 ~ 10678681 (+) True eif3d
XM_043231867.1 mRNA downstream 55102 10693698 ~ 10698540 (+) True LOC122333995
XM_043225671.1 mRNA downstream 72731 10711327 ~ 10769397 (+) True cacng2a
XM_043233860.1 mRNA downstream 179134 10817730 ~ 10820947 (+) True ifi35
TU27725 other upstream 591695 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 826407 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 876282 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 929603 9694632 ~ 9696559 (+) False aanat2
TU27325 other upstream 1440581 9184528 ~ 9185581 (+) False LOC122341719
TU28036 other downstream 114163 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 140210 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 523758 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 695163 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 730297 11368893 ~ 11369752 (+) True G18949

Expression Profile