RNA id: XM_043235684.1


Basic Information

Item Value
RNA id XM_043235684.1
length 4737
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC122341960
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18550993 ~ 18566606 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tAAACTGTATCTTACTTAGTAATTGTCAGTTCCTGAATTCACATTACTTTTACAGTAAGGTCATTACTTTCTATGCACAGTGTGTATAGCAAGCATTTATAAAGTTTGCACATTGTTTGAAGAAAGTACGAATGAATATTTGAtcaattgaaaaaataattgattCAATAATAGATTATGAAAGTATAGTTTGAAGCTTTTTCCCTTGACTGTGCATTAAGATATGGGGCTCCTGGGGTGGAGATGACTGGACTTCATAAAGACACTGCTGCTGTCACTCAGATACACTTTCTCTATGGACAGggCAGGATACTTTCTTTGTTGGATGATAACACCATTCACCTATGGGAGATTGTGCAGAGAGAAAACCGATCACATTTGGTGGAGGTTCACAGCTTCAACCTTCCTGGCAGGCCAGGCATCGAGAGCACCAGTGCGACACGTGTGACCGTCATGCTGTTGAAGCTGAGCTGTGATCTTCTTGCTCTGGGGACTGAAGGTGGCGGGGTGCACTTTCTGGAGCTGCCCAGCCTCACTTTGCTGAACAAGTCGCTGTTCCAGGATGAGATCATGCAGAGTGTTCCAGAGGAGTACAAGTGTGGAAAATCATTGGGGCCCGTGGAGTCCCTGCAGGAACATCCTCAAGACCCTGATAAAATCCTCATTGGTTACAGCAGAGGTCTGGTTGTACTCTGGGACCTCAACAGTCGGCATGTAGACAACCTCTTCCTGGGAAAACAGCAGCTGGAGAGTTTGGTCTGGGAACGGTCCGGGAACAGCTTTGTTAGTTCCCATAGTGATGGAGGATACATGGTGTGGGCTGTCAGCAGCAGCCTTCCCTGCACTCATGACCCCATCTCATCCACCATACCATATGGCCCCTTTCCCTGCAAAGCCGTGAACAAGATCCTGTGGAGAACAACAAAATCCGGAGCTCCTCTAGTGCTGTTCAGTGGCGGGATGCCCAGAGCCAGCTATGGAGACCGACACTGCTTGACCATCCTCCAGGACAGCAGCCACGTCACCCTTGATTTCACCTCGCGTGTCATAGACTTCTTCACCATTCACTGCACAGACAAAGATAAGGAATTTGATGAGCCGTCAGCGCTTGTGGTTCTTTTGGAAGAGGAGCTAGTAGTGATCGATCTTCAGATGGCTGGCTGGCCCACTGTCCCTGCTCCCTATCTGGCTCCTCTGCACTCCTCTGCCATCACCTGTTCATGTCACATCTCAAATGTGCCTCCCAAACTATGGGATAGAGTGATCAGTGCGGGCCAGCAGCAGAGTCCTCTGCAGAACTATGAGAACTGGCCAATATGTGGAGGGAAAAACTTAGCACCTGATCCCAAGCAGAAGGAACTGCTTTTAACTGGTCACGAGGATGGTACGGTGCGTTTCTGGGATGCGTCAGGAGTGTCGCTCAAACCGCTGTACAAACTGAGCACAGCCAACATCTTTCAGACAGACTGCGACCACAACGACAGCCTGACGCAGGCCGGGGAGGAGGAATGGCCTCCTTTCAGAAAGGTGGGCtgttttgacccatacagtgatGATCCCAGACTAGGAATCCAGAAGATCAGCCTCTGTAAATACAGCGGAAAACTGGTGGTGGCTGGAACTGCTGGACAAGTTATAGTTATGGTTCTTAGCGATGAGAAGTCGGATCACATGATTGACGTGGCCACGGTGGACCTGCTCCAGGACCGAGAGGGTTTCACGTGGAAGGGTCATGACCGGCTGCCTCCAAAGAGCGGCTCAGTAGTGTTTGCTGCTGGATTCCAGCCGGTTGTCCTGGTGCAGTGCATGCCCCCCGCAGCTGTTACCGCGGTAACCCTGCACGCAGAGTGGAACCTCATCGCTTTTGGCACCAGTCATGGCTTTGGCCTCTTTGACTACCATCGGCGAAGTCCAGTGCTGGCGAGGTGCACTCTGCACCCCAATGACTCTCTGGCTATGGAGGGCCCGCTTTCTCGAGTGAAGTCTCTGAAGAAATCCCTGCGTCAGTCCTTCAGGAGGATCCGGAAGAGCAGAGTCTCAGGAAAGAAACGTGCTGTTGTCAGTAGTCCCACCAGTAAAGTGCAGGAGGCTAACGCTCAGCTGGCGGAGCACGATGCTGAGGTGACACCGGTGCAGAGACGGATTGAACCCCGCTCTGCAGACGACTCTCTGTCTGGAGTCGTGCGCTGCCTCTGCTTCGCCGACACTTTCCTCAGAGATGGAACGCATCACGGACCTACAATGTGGGCCGGCACGAACTCTGGCTCGGTGTACGCATACGCTCTAGACGTCCCCTCGCAGGAGAAGTTCTCTGAGCCAAGTGTGGAGGCCCTGCTGGGAAAGGAGATCCAGCTCATGCACAGAGCTCCGGTGGTGTCCATCGCTGTGCTGGATGGCCGAGGGAACCCTCTGCCGGAGCCCTACGAAGTCTCCAGAGATCTGGCCAAAGCCCCAGACATGCAGGGCAGCCACTCGGTTCTCATTGCTTCTGAGGAGCAGTTTAAGGTTTTCATGTTGCCTAAAGTAAGCGCCAAGACCAAGTTCAAGTTGACCGCCCATGAAGGCTGTCGAGTACGAAAGGTGGCGCTGTCGAACTTCACCAGCATTAGCTCTGAAGATTACTCTGAGAACGCTCTGGTGTGTCTGACCAATCTGGGCGACAtccatgtgttcagtgtgccGGCACTGAGACCGCAAGTGCGCTACGACTGCATCCGCAAGGAAGACATCAGCGGCATTGCTTCCTGTGTGTTCACCAAAACTGGACAAGGGTTTTACCTGATTTCACCGTCGGAGTACGAGCGCTTCTCGCTGTCGGCTCGCGTGATCACAGAGCCGCTGTGTCGAGTGGATGTGGAGCGACCTCAGGATCTCTCTGCTCACAGCGGCTCCAGCACGACGTTCCCACCACAGGCTAATGGAACACACAAGACACAAGCAGAGAGCAAGTCTGAAGGGTTCTTTGATGAGATGCGGAGCGCCTTGCCCTCGCCTGTCCTGGATTCCCCAAACAGCAGCGCTGACATCACTCTGGACACCACAGGCGAGATCACCGTTGAGGACGTCAAAGACTTTTTAATGATGGTGGATGAAGCTGAGAATAACTACAGAAACATGACTGAAGAAGACGGGAGGCCTCCTGGAATCCTCATCAACTGAGGCGAGCCGCAGACAGCTGGAGgagcagTTATGGGTGAAGACTCATCAGCTGAATTTCTAAGTGGATCTTGATAGAGTGGTTTGTGACTCCGGAAGTTGCACCAAACATTGTTCATTACGTTTTTACAATGGGAATGTTGCACTTTTTTTCCCTGTGCCAAAAGACTGAATGATTCATTGtattttcctcattttcttCACCTTTcctccagttttttttttttctcagacaaCCGTTGGTTTCTTTTGAGGAGCcataaaatggtacattttaagGGATCAGGCAATAAAACAGCCGAGATATTGCACAATGTCTGTATGCAGGTAGAGGGCTACTTGCACTGAGCCCACAAAGTTTTTCTTCTTCGTTTGTCTTTTAAACATTCCTCTTTTGTCACGTCACCTCTCCTCTCACTGTGTGCCATGAATTAGGTTATACTAAATCGAATCAAAATTCCTAGATGTAGATTACATAGCTGCTACAGTTCATTAATCTCTAAAGGGTCTTTTGGGGCGACCAACTGCACAACAGAAAGTAATTTTTCAAGCATAATTatctggaaaaaaatactaagtGCCCTGCTCATTTATGAAGGTATATtctttccgtttttttttttttctttctcatcatGATAGCCTTTTCAACAATATCTATGATACTGTGATGGTTCCTGACCTCAAATCAGGAGTCTATTGAAAAGTTCAAGTTATGGACCCTGTGGGTTTGATAGAGATATTTTCCTCTCATTCAGTcgtctttattattattgttattattattatttttaaataatgtcccTTAACCACTTGCCATTGTAAGTAATTCTGGCAGTTAACTGTGAAGTGTGTCGTTTGAAGGAACATGGTGTGTAACCTTTTAGTATTCGCCGCAGTAATTCTAACCAGTTTTTGGCACAGCATTAACAAGGTATGAAGGAGCTAATGACTTTTCTATTTACACAGTATTCTTTAGAATAATTTTATATGGCTTATAAGGGTtggtattttgtattttatagatatttcaCTGGCATTTAGGTAACTAGGCATTTCTAACACTGCATTTTTGGGGCAATTATAAACAGTTGTGtagtattacattatattactaTACTATAGGCATTAGTGTAGCTTATCAAGGGAAAGAGTTATTGAGGGAATAGGACAAGTGTTGCACAGACATATTTGAATAAGACACAACTGGCTCCTTGGGTCAGATAATGCAGATGTTAGTCAGTGTGCTTTTAGAAGTAAAGTATGACATTTAAAGTGAAAGGCTctatttacattgtaattacaaagaaaactgCACATAAATACGTTGCTTGGTATTGATGCATTGTCACATTTTCTCCCTGCATTTTctgttctttgttttattggttaTATGTCAAGGGACCTCACTAATTGTAGTTTAAtttctgtttgtatatttgCCTTGCATAACCTTTACTTTCCATCCAGCACCTATCCTGTGaacatgtatttaatttttatttttctcgtgtagaattttaatttgagaTATAGCAATGCTAATGAAATCTTGAATGTTAATAAAGTATTTACTCCACA

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0016323 basolateral plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 392449 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 431569 18116538 ~ 18119426 (+) True G21073
TU31280 lncRNA upstream 508374 18035539 ~ 18042621 (+) True G21049
XR_006250480.1 lncRNA downstream 8081 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 9407 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 85755 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 135978 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 262080 18828686 ~ 18829253 (+) False LOC122341799
XM_043235936.1 mRNA upstream 568 18545034 ~ 18550427 (+) True LOC122342138
XM_043229189.1 mRNA upstream 11868 18537733 ~ 18539127 (+) True hsd17b14
XM_043235993.1 mRNA upstream 13892 18531295 ~ 18537103 (+) True LOC122342177
XM_043235959.1 mRNA upstream 33324 18507155 ~ 18517671 (+) True rab40c
XM_043235926.1 mRNA upstream 46957 18497742 ~ 18504038 (+) False pigq
XM_043234680.1 mRNA downstream 6058 18572664 ~ 18574419 (+) True LOC122341319
XM_043233829.1 mRNA downstream 137907 18704513 ~ 18711635 (+) True retreg3
XM_043235844.1 mRNA downstream 148319 18714925 ~ 18719722 (+) True LOC122342072
XM_043235430.1 mRNA downstream 262059 18828665 ~ 18841760 (+) True LOC122341799
XM_043225694.1 mRNA downstream 389424 18956030 ~ 18959493 (+) True LOC122329464
TU31399 other upstream 33330 18443390 ~ 18517665 (+) True G21124
TU31393 other upstream 33330 18506130 ~ 18517665 (+) False G21124
XR_006250035.1 other upstream 125919 18405966 ~ 18425076 (+) True nubp1
TU31277 other upstream 449063 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 475421 18074397 ~ 18075574 (+) False LOC122341796
TU31466 other downstream 115748 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 159355 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 159355 18725961 ~ 18729368 (+) False G21182
TU31493 other downstream 166559 18733165 ~ 18733765 (+) True G21183
TU31398 other downstream 269053 18835659 ~ 18843419 (+) False G21124

Expression Profile