RNA id: XM_043235686.1


Basic Information

Item Value
RNA id XM_043235686.1
length 1351
RNA type mRNA
GC content 0.49
exon number 10
gene id zfand2a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16876854 ~ 16882081 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCACGCCCCCAGCGATGACATCTCAAAAAACGGCAGACGACTACAAAACCCCAAACACAGCGGCTGCGACAGCTCCGAGCGAAACGCGTTAGAAATCTTCCCGAGCTGGGACCAATATAAGATTTGCGGATAATTTCGCTCGCTCAGAAGGTGATGCTCTGATTTGTGTACACAGTCCAGCAGCTGAGCTCTTTCACCACTGTGCCATGGAGTTTCCAGATCTCGGGGAGCACTGCTCGGAGAAGAGCTGCAAACGTCTCGATTTTCTTCCAATGAAATGTGATGCCTGTGAAGACATTTTCTGCAAAGACCACATAACTTATGCAAATCACAAGTGCACTTCATCGTACAAGAAGGATGTCCAGGTTCCTGTGTGTCCGTTGTGCAACACCCCCATTCCCATTAGAAGAGGGGAAATGCCGGACATCAAAGTTGGCGAACATATAGACAGAGACTGCAAATCTGACCCCGCTCAGAGGAAACGAAAAatatttacaaataaatgctccAAGGGCGGCTGTAAGCAGAAGGAAATGATCCGGGTCACGTGTGACCAGTGCCACTTGAACTACTGTCTCAAACATAGacatccactcgaccatgactGTAAGACTGACGGCAAGCCGGTCTCCAAATCAGGGCATGCTGCTTTAATGAGAGCTCAAAGCTCTTCTTCCAATAACGCGGCGGCCTCCTCCACTAGAGGGAGCTCTAGGTCCGTGTCTAATGGAGTGACTGGGAACACTAGACCTCAGAGCAGCAGTGCTCAGAGGATAAATACTTCTCCGATGGTGTCTCCAACAGCACAGAATGTAATTCCCCCATCAGCGTCATTTCAAGCCGGGCTGaCAGAGGAACAGGCCCTCCAGAGAGCATTAGAAATGTCACTCGCTGAATCTGCTCGGGCAAGCCAGCCAAGCCCTCAGGAGCAGGAGGATCTGGCCTTAGCTCAGGCTCTTGCTGCCAGTGAGGAAGAGTACAGGCGACAGCAGCAGAGACAACAGGGAGGAGTTTTCAAAGAGACCAGCTGCTGTCTGTCTTAATGTGAGGTGACCTGACCGACTATAATCTGCCTCAATCTGCACACGAGCACCAGTGATGTACCAGTGAGCTGCACATGTCTAGTGGATTTCAGAGTCCAGCATACGAAGCTTCTACTTCCCAAGTCAACACATCCGATGGCTGCCATGTTGTCGTTTTTCTGTTTCGCGTCACTCTGTACTGTGCTTCTTAGACGGGCAATTGTGCCGTTTCGGCGAGAGGTgcttcatgtaaatattttatataggtATCACGTTAAACTGTCAATCAATGTAGatgtcttttgaaataaattattttaaagtgtt

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30839 lncRNA upstream 89804 16786832 ~ 16787050 (+) True G20744
TU30837 lncRNA upstream 92357 16784277 ~ 16784497 (+) False micall2a
TU30836 lncRNA upstream 93013 16783234 ~ 16783841 (+) False micall2a
XR_006250530.1 lncRNA upstream 279639 16596292 ~ 16597215 (+) True LOC122342129
TU30709 lncRNA upstream 568836 16307798 ~ 16308018 (+) True G20656
TU30900 lncRNA downstream 107131 16989212 ~ 17052645 (+) True G20798
XR_006250505.1 lncRNA downstream 125314 17007395 ~ 17019304 (+) True LOC122341954
TU30917 lncRNA downstream 125666 17007747 ~ 17019304 (+) False LOC122341954
TU30899 lncRNA downstream 157110 17039191 ~ 17042404 (+) True G20797
TU30904 lncRNA downstream 175623 17057704 ~ 17062823 (+) True G20801
XM_043235943.1 mRNA upstream 92043 16770545 ~ 16784811 (+) False micall2a
XM_043235945.1 mRNA upstream 92043 16770817 ~ 16784811 (+) False micall2a
XM_043235941.1 mRNA upstream 92044 16770545 ~ 16784810 (+) True micall2a
XM_043235944.1 mRNA upstream 95296 16770545 ~ 16781558 (+) False micall2a
XM_043233888.1 mRNA upstream 107411 16756053 ~ 16769443 (+) True si:dkey-43p13.5
XM_043229195.1 mRNA downstream 13888 16895969 ~ 16902970 (+) True galr2b
XM_043235717.1 mRNA downstream 52052 16934133 ~ 16935519 (+) True LOC122341973
XM_043235100.1 mRNA downstream 142553 17024634 ~ 17037487 (+) False zc3h7a
XM_043235101.1 mRNA downstream 142786 17024867 ~ 17037487 (+) True zc3h7a
XM_043235204.1 mRNA downstream 160968 17043049 ~ 17045292 (+) True litaf
TU30773 other upstream 177372 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 177372 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 177372 16697999 ~ 16699482 (+) False LOC122331507
TU30661 other upstream 671686 16179910 ~ 16205168 (+) False gna12a
TU30221 other upstream 1707596 15168338 ~ 15169258 (+) True G20295
unassigned_transcript_287 other downstream 123833 17005914 ~ 17005985 (+) True trnat-cgu_1
XR_006250523.1 other downstream 231071 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 281620 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 837101 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 1022523 17904604 ~ 17906643 (+) True polr3k

Expression Profile