RNA id: XM_043235694.1


Basic Information

Item Value
RNA id XM_043235694.1
length 6553
RNA type mRNA
GC content 0.48
exon number 18
gene id camsap3
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9214244 ~ 9245657 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACCTGGAAATCAGACGCTTACGGAGCGTATCAGCCAGAGGGATGTGGACTCTGAAGCGGCGTCGAAAATAGTGAAACATCCCGGGGAACACGGCCGAATCAGTCGCTCCGACAGATCAAAACACACCCACACGTAGGAAAAGAAGACATAGAGAGGATTAAATTGCAAATTCCTATATTTTTTCCTCTGGATTGCTCCCCTGAACGTCGGCCTTTCTCAGTCCCAATGCTGTGGTCGCGTGAAAGGAGAGGATGactgtttgattttgtttcacTGCTCACCGCATCGCcttcctctgttttttttttctgtttcggACCTGCTATGGTGGACTCGAATGCAATGAGGAAGACTTTCGTGGTCCCGGATATAAAGCCATTGGATCAGTACGATTTGCCCAGAGCCAAAATCTGCGCCAGTGTTGGGTGGCTTCTGGCGAAATCTTACGGCAATGCAGaGAATGTTCCGGTGGAGCTGCGAGACCCGTTCTACTGTGATCAGTATGAGCAAGAACACCTGAAACCTCCTGTCACTCGCCTGCTGCTGTCTCCTGAGCTCTACTGTCGCACTTATGGCCTTCTGCTCGGCGGAAGCCCGGGGGCCGAGGGGCCCCCCAAAGACATCCCAGCACTCCTACAGGTCCTGGGCAGGAAAGGCTTGGCCCCCAAAGACCAGAATGCCCCCGTGACAGAGGCCGAGCTCCGGCAGAAGCCCATCAAAATGAGTGCCCACTTGGAGTTGATAGATGCCTTAATGGCAGTGGGTGCCATGGAGACGGTGAGCACAGTCTTGGCGAGTGGTGGATCGGAGTTACTTGGTACAGATGCAACCTGGGACAGAGCCCTGCTTTACTGGGTGAAAACGCTGAATCGAAAACTGAAGGAACAAACAGATGGTACACAAAATGACGCATCTCAGCCTAGTACTGAACCAGAGCCGGTTCAACCTTCGTGTCCCACCCGCTGGTACTGGAAACTTGTTCCTATCCGGTACAGGAAGGACAGGATGCAGTCTAAGCTCAAACCCTATTTTCCTGTGGTGAATGAAGTGAAGGATCTCTCAAACGGATGTGCTATTGCTGCAGTTATTCACTATTACTGTCCTGGTCTACTGAGATTGGAGGATGTATGTATGAAGGACTCCATGTCTGTGGCTGACAGCCTGTACAACCTACAGCTGATTCGAGAGTTCTGTGACAGCTGCTTGAAGAGCTGCTGCCCTCTAGTGTTGGAGGATTTGCTCTACAGCACAGCAGAATTAAAGaCAAACATACTGAGCTTTCTGGCAGAGCTCTTGTATTGGTTTGAGATCTCAAAGCCAGAGTTTGTTCAGCCCCTGCAGGACTCTGAGCTGACTGaAATGTCTGGCAGGACCAGCAATGGCAACAGCGGGCCCAGCAATAGTGGTTCTCCCTCTATCTTCAAAAAGCCTTTCCTGCCCATCTCTTCCCCTGTGACCACAGCAACAGAAGCAGCAGGACGAACGTGGACTAAGAAACCACTTAGCCGTCccctctcctctgctgtgtccttTAGTATTCCTTTTGGACTGGACAGTGATGTGGACATTGTGATGGGGAACCCTGTTATAACTCGGTCAGTCAGTTCGGACAATCTTAACCCTGCTGGCCAGTCCATGACACATGTCCCATACACACCCCCAGAGGACCTCAGCCACTTGCTTAGTAAGGCTCCTGGGCCTAATGGCCCTCAAAGAGCTTCCTGGGCCACTCGAACACGTCCGATGCTGGCTGAAGAGAACGGCATTGATGATAGTGAAACAGGAGAGCTACCAACCATTGAAGAGGCACTGCAGATCATTCACAATGAAGAAAAGATGGAGCCTCGCCTTCACCCGGATGGGGCTCCTGATGGATTCTACCTGCATTCACCAGATGATCCAGCAACTGCTAGACTTAATGGCAGCCCAGTGACTCTCAGCTCATCAGCCCCGTCTCGCTCAGGAATGCTCTACCATCGATCCTCAGGAGTCCCATCAGAGTCTAGTCGCACCAGACATCCCTCAGAGGGATCCAGAGATGACGACTCCGTGTTAAGAGATGGAAGTGTGGATTCGGATGCCTCAGAAGATCTTCCAAAAACTCACTCCACCCCTGCCACACCTGCCTCAGGCCCTCGCAAAACACAACCGCGTAGTGAAGAGACACCAGATAGTGGTGTTAGGATGACCAATTTTGCTGAGCGAAAGAAGAAACTTGTTCCAGAGCAGGTACGACCCAATGAACCACAGGCCTCACAGATGACTACATGGGCCAAGAAATCAGAGGAGAGTCCCAGTAAGAGTCCAGCTCTCAGCACTGAAATGTCAGAGCTGGGGGCGAGACTGGAAGAGAAGCGGAAGGCTATTGAGGCTCAGAAGAAGCGAATAGAAGCCATCTTTGCCAAACACCGGCAACGGCTGGGAAAAAGTGCCTTcctgcaattaaaaaaagagcaggaGGATGGGGATGGTGAGGAAGGATGTCAAGGAGAGGTTGGTACCTCCTCTGTAGAAGATGACCTCAGCCGTTTGGCACTAGAGGAGAAACTGGCACGCTTGGAGAGTGAGGAGCAGCAAGAGGAGGAACAGCTGAAGAAGGGTCCCTCAGTAGAAGAAGAGGGAAATATTAAGCCCCCTTTCCAACCGGACAGCACAGTAGAAAGAGAAAAGGCTGGAGTAGGAGTTCCTGGAGGAAAAGGCACAGCTCCTCTGGGAGATTACAACAATGCCGTGTCTAAACTAAGTGCTGCTCTCAATTCTCTACAAAGCGATATGCAGCGCCTCTCGGAGCAGCAGAACCAGCTGATGAAGAAGAAGGGAGCTCCCAACAATCAGGCTTGGGTCATCCCACCCAGCTCCAAACCCTCAACAACTGCACCTTCTCGTTTGTCAAGGGAGTCCACTCGTGACCTGCCCTCAGCCTCGTCTTCTCCTTCCCCATCTCGCAAGATTGCAAGTCACAGCGCTCCACCCAAATCACCTGCGTCCCACCGTAGGGCACAGTCTGCACCTCCAAAGAGCCCCAAACTGCATCACCACCCTCGACCTGCAGAGCTCAAGACTCCTGTTTCCACAAGAGTCATAACTCCCCCTCAAAGTGTGGACAACCTTCCTCATTTGCGAAGAGTTTCCCCTTGGCAATACAGGGATCAGAACTCATCCTCTTTTAGCATAGGTACCTCCAGTCAGAGTGAGTCTCGCTCAGCTTCCTCCCTGGCTAGACCAGAGGACAACTTTTCAGACACTGGCTCCAGTGAGGACCATACAATCTTCAGTATGGAACTGGACAGCGGATCTTCACAAATTCTGCCTCGAAAGGAGCGCCAGGGTGGGGGAAGCAGCTCAGGAGCTCCTTCCGAGTGCTCCTTTGAGAGTGACATTCCTGCAGCATCTTTCAATGGCAAGCGCAACAGCCTTATCGAGATCTCACTGTCCTCTCTCAAAGCGTTAGAGGCTGAAGAAGCCGATCAGAGCCAGGATCTCTTCTCCGATTCAATGAGCGACCAAACGGAGCCAGAAACTAGGGGCGGAGTTGGATTCTTCTTCAAGCAGGATGAAGCTCGACCTGAGGATGAGATGGAAAGGAGAAGAGCTGCATTACTTGAGAAACAACAAAAGAGAGCGGAGGAGATGAAGAGACGAAGACAGGagcaagaaaaagagagggaggcaAGGTCATCTTCGGTGGATGAGCCTCGAGGAGGAGAGGATAGACCTCAAACTCCTTCTACCCCTCCGCCTCCACGCACCCCTCCACCAGAGGGCACTCCTCAGCGGCGTGGAGACTTCACTCGCCAGGAGTATGAACGGCGACATCAGCTAAAAATAATGGAGGATCTAGATAAAGTTCTCCGCCAGAAACCCACTACAGTAAGAGGCGTCAAGAAGCAGAGGCCCAAAACAGTGTTCAGAGATGACTCCGACCTCTCTCGCAGCCCTGCCAAAGGGTTTATGGgtTCAAgactaaataaagtttattcTCATTCAACAATGAATCTGTCCTCCATGGCCAATGACAGTGGAACGCTAACTGTTAGAAAATCTCCAAGTCGTTCTCATTCACCATCCAGACTGCTGTCTCCAGGCCGTCTTGCTGCACAAAATGGGGACTGGGAAAATGCATCTACAATTTCATCCCCAGCTTCCATCCCAGAATACACTgGGCCGAAGCTCTACAAGGAGCCGAGCTTCAAGTCCAATAAGTTCATTATCCATAATGCCATCTCTCGCTGTTGTTTGGCAGGCAAGGTCAATGAACCTCAGAAAAACAAGATTGTAGAGGAAATGGAGAAAAGCTCTGCAAACCATTTTCTCATCCTGTTCCGGGACGCTAGCTGTCAATTCCGGGCGGTTTACACGATGAACCCAGAAACGGAGGAGATGGTTAGGCTCACAGGTATCGGGCCGCGTGTTATCAGTCCCACTATGGTAGAGTCTATCTACAAGTACAGCTCTGACCGCAAGCAGTTCACGGCCATCCCGTCCAAGACCATGTCCATGAGCGTGGATGCCTTCACCATTCCCAACCACCTATGGGAGCGCAAGCGCCCGGGAACCCCAAAGAAGCTCGGGACCCCAAAATAAAGCCTGCTGGAAATGCCAACTATGCCTGAGCTGACCACATCACCCTGGGTTTCTGTTCCCACTCCAGCAGAGTAGCGGGGCACAGTGGAGTGCATGCCTGGAGAAGGAGTGGGGTAACAAAAAAGAGCCCTAATACAGAAAATCCTAATATAAAGTGCCCTCAGAGGTTCATGCCGGGTGACTGTGCAGGTCAAGTTACAAAGATCTATTTAGAAATCTTCATTGCCATTTTCTTAAGGTAACTCAAGTCATAAGGGCCTGATTGGTTTTCTAAGATTGTACAAAACGTATCCTTGGCATTTTAGATGCAACTTTCCAGTCTCACCTTTCAAGTAAAATGAATGTCCTCCAGAAAAAGATCCTCAGAAATGTTACTATCTTCCAACTCCTTCCCTCCTTTACTCACTGAACTGGATCCATTGACATGTAAAGGATGCCCCAGATGAAATCGGATCTTTGCTCTTTGATGAATGTAGGGCACAAACCAACACAGGCCTTCTTATCGTCTGTTTTTTGTCATCAGCTTCTCAGTCGTAAGGGTCTGAATGTAGAACTGTATTACAAAGGGGCACAGCCACTCTCCAGCGGAAAAGTCCCACGCTGCTGTCCATTTAGAGTCTGTCTTGCTCTTTAATCAAACCGCCCTGTCGTTTGGCCTTCCTAAAGTCAGTCGCAGACATCtggatgtttgttttcttaatgCTTCGGACCTAATCTAACTGGATCACTCATGGTTTTGGACCTCAGGAGAGCATGTTAAAGACTCAGATATTTTTCCTTCCCATTTGCTTTAAtgaagaatgaatgaaaaagcgAAAAAATTGCCAGAACGTGCTGTCGATTTCCATTAACGATACTCAGAAAATGAAGGAAGTCTTTTTACTCTGTTTAGCTGTAACTGGAAAaataatgtaagaaaaaaaatcaagcctgatttaatatactgtatatttgaatgCTGTTTATTGCTGAttcatgcataattttttttttgacaatgatTTGTATATTGTGGCGATTTGTAAGCAATGAATAAGCTACCCTGCTGCTTCACTACTAGAGCTGGATGTGCTGGTGTGAATGGGTGTGTGAACGGGACCGGGGACAGAATGAGACAGATGGTGAGAAACAATAAAGGCAAATCTGATATTAACTCTCACTCATGTACCCAGAGCTGAATGAACAAGTAACGAGTAACACATACTTACATCCCAACATGCAGCAGCATATAGTGATATACCAATAGTGAACACCAACAGAAAGTGACATTAAAAGGAAGTGATTAAAGGCAGATGAGCAGCCCTGGTGTCTCCAGCCTTAAACGGTTATGTTGTTTCTATTACTATGATCTATGAATAGTCTCCAAACTGTCTAACTTGGCCTTATTCGTTTCTTGGATGGCTTGAAGTTgtcttttttgtaataaaaggggcatttagtctgtttttctttatcaaagcactaaaacaactgATTCAGTCAGGCCACCCTTTCCTGTCTTTGGGGAATCAGATGAAGTACTTCACAGATTCGCTGTAAAGatgtacatatttttgtaaagagccaaaaaaaaatcatttttgaaatgaTTGGATGATATGTTTCTGTGTCAAATGAATGGGAGGATGTGTGTTCGTGTGTCGGTTGCATGCGTTTGTCTGTCGGGTGAAACATGATGGTGTAATGTAACTGGATTCTGTGCAATTCTGTAGAATGTTAGGTCACCTAAAGTGTATTTATTGGGTAAGGATGAGCTAgagttttctgttttagtttgagattttattatttatgttctGGCAAATGTGGTGATTCACTCGTTCATTTCAGAAAGCAcattaatgttttgtatttttcttttactgtttCCATGTTAATGTTGGTAGATTTAGTTTTCTCCCAAATTCTTTGATTATGGATCAATCCCATGTGACAggattagaaaaataaaatttttaaataatccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27326 lncRNA upstream 28663 9184399 ~ 9185581 (+) True LOC122341719
TU27339 lncRNA upstream 30968 9182540 ~ 9183276 (+) False brd4
TU27303 lncRNA upstream 202066 9011693 ~ 9012178 (+) False pgls
TU27283 lncRNA upstream 225634 8987053 ~ 8988610 (+) False LOC122341292
TU27278 lncRNA upstream 332122 8881198 ~ 8882122 (+) True G18261
TU27353 lncRNA downstream 4442 9250099 ~ 9250630 (+) True G18303
TU27355 lncRNA downstream 16313 9261970 ~ 9262239 (+) True G18305
TU27527 lncRNA downstream 167987 9413644 ~ 9414007 (+) True G18425
TU27532 lncRNA downstream 238778 9484435 ~ 9484736 (+) True G18429
TU27551 lncRNA downstream 296043 9541700 ~ 9543366 (+) True G18443
XM_043235848.1 mRNA upstream 1310 9206654 ~ 9212934 (+) True xab2
XM_043235489.1 mRNA upstream 7890 9202831 ~ 9206354 (+) True LOC122341842
XM_043235488.1 mRNA upstream 14542 9189136 ~ 9199702 (+) True stxbp2
XM_043235292.1 mRNA upstream 28647 9184485 ~ 9185597 (+) False LOC122341719
XM_043233738.1 mRNA upstream 30954 9169988 ~ 9183290 (+) False brd4
XM_043229938.1 mRNA downstream 15248 9260905 ~ 9267730 (+) True zmp:0000001048
XM_043235655.1 mRNA downstream 108041 9353698 ~ 9400810 (+) True col5a3a
XM_043235656.1 mRNA downstream 108041 9353698 ~ 9400810 (+) False col5a3a
XM_043235676.1 mRNA downstream 183207 9428864 ~ 9487188 (+) False olfm2a
XM_043235675.1 mRNA downstream 216732 9462389 ~ 9487188 (+) True olfm2a
TU27323 other upstream 28584 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 28663 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 650868 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 448975 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 494139 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 553158 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 780161 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1507102 10752759 ~ 10781853 (+) False kcna7

Expression Profile