RNA id: XM_043235697.1


Basic Information

Item Value
RNA id XM_043235697.1
length 2290
RNA type mRNA
GC content 0.41
exon number 10
gene id shfl
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9255441 ~ 9260491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttgatcaaactgAAAGTGATATGTCACACCAACATACTGAAAGCGCTAAAGGAAACGGTGCCACAGTGTAAGAGGTTTAGCGCTGTCATTACAGGTACTAAAACTACACCgaaagacagagagatgagTCGAATGCGTGAAGAAGTGGAGTTGGAGAAAAGTGTGAGGCGATTGAGAGAGAAGTTTCATGGACTTATTGAAATCGACAAGGCGGTATTGCTCATGCGACGCTATGGAAACAACCATCGTATGGTTGCAATGTGCGTCGCCCTGGCAGATAACGACAGGGAGCTGGACGAGGAAGACGAGTCGGCTTTGAATAACGACCCCGTAGCTAAGAACGTGGTTATGAAGCTCACAGCCGATGAAAAACAACAGgAAGAAAAACCCACCAGGTCATCTGGATCCAGTGGTGCCGGTTTTTCAGCGCAAGCACCgggcaagaaaaaaaacaatgatgatACCGATATAGCGGAGCTCGGGGCACGTCTACGAGTTCTGCCGTTAACAGAGGAAAACAAACGAATGTTTGACCAGGCTCAGGAAAACCAGATCCCTTCTGTCATACATCAGTTTGCCTGCGAGTCATGTGACAGGGATTGGTGGAGACGTGTGCCTCAGAGGAAAAGGGTGTCACGCTGTCACCGATGCAAAAGGAAGTACGATCCTGTGCCAGCCAACAAAATGTGGGGTATAGCAGAGTTTAACTGTCCAAACTGTTTGCGGACCTTCAAgGGTTTTGGGCGGATGGATGGACGTTCGCCTTGTTATGGCTGTCGCTCAGCCATTTTCCCCTCAAAGATTCTGCCACCCAGGAAGAGGAGTATGATGCCTGGGCCTAGAAGCAGAAATCAGCACAGCTGCCTTGCTGAAGACTGTTATAATCGAATGGAGCCCCATGTACCTGGTACGGAATGCGTTCACCCACACAGCAGACAGAAGAACAGGAAGCCACGCGTGGTTTACCCCAGCCCCGCTCACATCAGCAGCGGATCCACCGTCAACACCTGCCTGAGCCAGGGGAGTCTGATAGAAAGCATCAATGAGCTCATTCTAGATGACATTGAAGAAGAGTCTGACGAAGACTCTGACAGCAGCACCTGAAGCAGCAGTTAAACCGCTGAATCACTTCAGCTGCTGCTTTGAATGAAACCTCATGTAACCTTTGATGTAATTGCAAATAATTCACTCAAAGTAACCAATGCATCAAGGCTATAAGCAgactgaataaaatatgtaatgtacCGCAGGCTATATGAACACAGTGCAACATACACCAAACATAAAATCCAGATAAGCAATGACTGACCCCCTGCTGCGGTGTGTATCCAAGAGGGAGCATTTGTGGTTTTCAGTGATGCAGACGATTTACTGACGTGACATGAAACTTGGAAATAGTTGAAATGaccgtcagccaatcagagtctAGAGCATTTGGCAGCACTGTGATGTCATGTTGAATACAAAGCCCAGATATACTTCTTTAAATGTCGATCATACCCTGTTCCTCTCCTTATTCCTTGAATTGTATTATACTGCAGTTtagtatgtttatttgtatatttaagttaGTATATTTCCCcctcatatttttattgttatgttgTCTTTAATAGAATCATAAAAAGCCACATAAGAATAATCTgttacactttacaataaagttcaGTTTGTTGACATTGTTGAAAATACATACTAGGAATTaacaacaaacaatatttaaagcattcaaTATTTACTTAACTAATGTCAGGATTGATCTAAGCATTTACAGTCAGGTTTAAATTCAAAAGTTGCATCTTTggtctaaaatgaaaatatttcattaacattGAGGTTGAtcaatgctgtaaaatatacCTTTTCAGAGTTTTTCAAATGTTAGAAAATGCATTAGCACGTTAACAAACGAGACCTTTTTTGTATAGTGTTTCCTAGTCTTTAAGTTTACACGAAACCTAAGAAAAGTATTTGTtaagaaataatttgattttCTAGCTTTCAAAACATTAGTTGTTCTCTTTCTCAGGTTCAAATTTTTGTAATCCCCCGTTTTTAGACTACTCTTCACACAACTAACAAATACAGGCACTTACGAAGAAAAAGCAGACAGCTCCTGATGAGCAAAACAGATCAGCCTTACATAAGCTGCCATACACACATAAGAGTTGCATGGCGAACTCTAATGAAGATTTCAGGGACATCTGcagggattaaaaaaaaaaggccaaagaCAGACAATGTGTTtaacaataatgttaaataaaaatctggaaTTGTGGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27489 lncRNA downstream 55739 9198608 ~ 9199702 (-) True G18388
TU27477 lncRNA downstream 72170 9182539 ~ 9183271 (-) True G18378
TU27434 lncRNA downstream 118049 9134105 ~ 9137392 (-) True LOC122331343
TU27443 lncRNA downstream 118049 9134105 ~ 9137392 (-) False LOC122331343
TU27431 lncRNA downstream 121628 9133614 ~ 9133813 (-) True G18357
TU27528 lncRNA upstream 152913 9413404 ~ 9414007 (-) True G18426
TU27547 lncRNA upstream 220830 9481321 ~ 9485355 (-) True G18439
XR_006250528.1 lncRNA upstream 251955 9512446 ~ 9533787 (-) True LOC122342127
XR_006250529.1 lncRNA upstream 272226 9532717 ~ 9533787 (-) False LOC122342127
TU27754 lncRNA upstream 311109 9571600 ~ 9571805 (-) True G18599
XM_043235698.1 mRNA downstream 1033 9252311 ~ 9254408 (-) True soul5
XM_043235696.1 mRNA downstream 4218 9246376 ~ 9251223 (-) True nr5a5
XM_043228895.1 mRNA downstream 117352 9134043 ~ 9138089 (-) False LOC122331343
XM_043229550.1 mRNA downstream 122636 9129812 ~ 9132805 (-) True lpar2a
XM_043225847.1 mRNA downstream 188638 9065001 ~ 9066803 (-) True LOC122329549
XM_043229924.1 mRNA upstream 5282 9265773 ~ 9294849 (-) False notch3
XM_043229915.1 mRNA upstream 5282 9265773 ~ 9294849 (-) True notch3
XM_043226026.1 mRNA upstream 72605 9333096 ~ 9341003 (-) True rdh8a
XM_043235554.1 mRNA upstream 277885 9538376 ~ 9563382 (-) True trip10a
XM_043235552.1 mRNA upstream 303260 9563751 ~ 9569327 (-) True icam5
TU27085 other downstream 856613 8309552 ~ 8398828 (-) True fmc1
TU27088 other downstream 944092 8309552 ~ 8311349 (-) False fmc1
XR_006250544.1 other downstream 1036386 8218902 ~ 8219055 (-) True LOC122342198
TU27061 other downstream 1046348 8207764 ~ 8209093 (-) False LOC122339740
XR_006248283.1 other downstream 1240740 8011441 ~ 8014701 (-) True LOC122331739
TU27537 other upstream 166081 9426572 ~ 9462905 (-) True G18433
XR_006250486.1 other upstream 1133823 10394314 ~ 10396341 (-) True eef2kmt
XR_006250541.1 other upstream 1518610 10779101 ~ 10779235 (-) True LOC122342195
XR_006250542.1 other upstream 1519611 10780102 ~ 10780196 (-) True LOC122342196
XR_006248663.1 other upstream 1751445 11011936 ~ 11064583 (-) False lrrc4ba

Expression Profile