RNA id: XM_043235710.1


Basic Information

Item Value
RNA id XM_043235710.1
length 3084
RNA type mRNA
GC content 0.46
exon number 13
gene id baiap2a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7656031 ~ 7725519 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTTGAGCAGAGATCAGACTCCTGTGGATCGGAGCGCGGATCTGCAGCTGACCCTCATCACACAGACACTGTTCGGATAACACATCACGTTCGGCAAAACACCGTTTATGGTTTTAACTGAAGATTTCACAATGTCTCGCACCGACGAGGTCCACCGCATTACGGAAAATGTCTATAAGACCATCATGGAACAGTTCAATCCCTGTTTGCGGAATTTCATCGCCATGGGAAAGAACTACGAGAAGGCTCTCTCCAGTGTGACGTTTGCAGCGAAGGGCTATTTCGATGCTCTGGTGAGAATGGGAGAGCTGGCCAGTGAAAGCCAAGGATCAAAAGACTTGGGGGACGTGCTTTTCCAGATGGCAGAGGTCCACCGACAGATTCAAGTGCAGTTAGAGGAAATgTTGAAATGCTTCCACAACGAGCTGCTGTCGGAGCTGGAGAAGAAGGTGGAATTGGACGCGAGATACCTGACTGCGGCTCTTAAGAAGTACCAGatggagcacaaaagcaaaGGAGAAAGTCTGGAGAAATGCCAGGGCGAGCTGAAGAAACTGCGGAGGAAGAGCCAGGGCAGCAAGAACCCCTCCAAGTACGGCGAGAAGGAGTTGCAGTACGTTGAAACCATCAGCAGTAAACAGAGTGAGCTGGACAGCTTCATTGCAGAGGGCTACAAAACAGCACTTTCAGAGGAACGTAGGAGATACTGTTTCCTGGTGGACCGCCAGTGCGCTGTGGCCAAGAACAGCAGCGCTTACCATGGCAAGGGTAAGGACTTGTTAACCCAGAAGATCCCAGTGTGGCAGCAGGCCTGTTCAGACCCCAACAAGCTGCCCGACAGGGCCATGCTCCTCGCCCAGCAGATGAGCTCTGGATCTGGCACCCTCCTCTCCAGCCCTCTGCACTCCTCCAAGGGCAACCTGGTCATCTCAGATCCCATTCCTGGAGCTCAACCGCTGCCTGTGCCCCCTGAACTAGCTGCCTTCATGGGAAGTGGCCTGGGCCATCAGGGGCGGCTAATGGGTCCTGATGGCATGTCTTTGGTGAACGGGACAACGGGAGTCCATGGAGACGACTACTGGACGGAGGGCGGGGTCTCTCAGGGAAGACCACCCTCTCCGCAGAATCAGTCTCAAACGCAGAGCCAACCCCAGAGACAGGTCAGCGACGTCTATTCTAACACCCTGCCTGTCCGCAGGCCCCAGCCGGCTAAAAACAAGACCACTGTGGGAGAGACACGAACTCTGCCCAGGTCAAGTTCCATGGCGGCCGGTCTGGAGAAGAACGGACGTTCTCGGGTTCAGGCCATTTTCTCCCACGCCGCTGGAGACAACAGCACCCTTCTGAGCTTCACTGAGGGCGACATTATCACCCTGCTGGTGCCAGAGGCTCGGGACGGCTGGCACTATGGGGAGAATGAGAAAAACAAGATGCGCGGCTGGTTTCCTTTTTCCTATACCCGAGTGCTGCCTGACAGTGACGGGGAGAAGTTAAGAGTCAATCTTCACCATGGGAAGAGCAGCAGCACGGGAAACCTGCTGGAGAGAGAGGACATGTCCTTGCCCATGCCTGACTATGGTCTGACTGCCCGACTGTTGGCACAGAGCCTAACACAGACTCGACCACGTCCCTACAGCATGGCAGGCTTcgcacagTGACCGTTCCCTGGAGGTCTACCTCAGGCCAAGCATCCTGGACGACCGAACCGCTCCTCTCTACTACTAGAGGGGCCATGCAGTGGCCTGTGCACTCTGTCGCCCTCTTCTGTTCTGTCTGTGTCATTGCAGCAGCATGCGGAGGCAGAGCACATGAATTTACCCACAGGGCACGAAGGATAGAGCTGGTTGTGTTCTTAAAGGATTAAAATAAAGATCTTAACTCTGTAGCTACATAATTAACGGTATTTGTATCCACCGATTCACGTATTTCAAAAGTTAACAGCTTTTCTAAATGGATTTCTTTGTTGACAAATCAGGCACAACCTGAAACAATGAccgtgtgctttttttttttttttttttttttttttttgctgtttgatttttttttttggagggaaaGTGTAAGCCTGATTGTTTAAACGTGAgaacttttatttgaatgaatgtgaaaatgtaaaaaaaaaaaaaaaaaaaaagtgtaatttggtagatattatttctataaatgcAGTTCTATAGGGAagcctttctttttctgtcagtTATCTATGTTTTGTGGCACATGCCTCTATCACTCATTTCAGAAAGCTGATGAAACCTCTTTGCGGGGATCTTGACGCTGTGGTCGCTCTGTATTAAACAGACCACTGTGCTTTGCTAAAGTTCTAGTGATGCCTCTGTGAATTCTCTGTCTTTGCAGAGATCTGTACAGTTATATTAGATGCAATATATAGTGCAATTTTTCATGCAAGTGGCACCGACACAGGAACTGTGcctttttcctgttgttttgtgCTCAATGCGGTTATCTGTAACTCCACTGGTGTAAGTAAAGGGAATTGctgtttcatttgatttttgtaCTATTATTTGCTcctactgtacttttttttttgttgttgttcttttccTAGAAATTTCAATGACTGTTATAGATATATAAGGGGGTTTATTTGTCTTCACCTGCTGCTTTTGCTTTTCCACGTACTGAGCAATACTGcttattaaatatcaaaaatagaCTTGCTGAATAAtagtgaaaaaattcaattgcaggttctgtaaatatattttttggtttgtttcggCTTGAGGGACTGAAAAGCAGACTAGAGCGGTATACATAACCACTGATTTTCAAAAGTGTTACCGGAAAATACTATATCAGCTAGTTTAGATACTGCTATGaattgcatgttttatatattagagCATCTACTGTGGATCGTGTGAGGAAGGTGGGAACGTTGTGTGATTCTTTCGATGGAATGGAAGATTTTGTGTCTGAtcagctttaaaatcaattttacaatgttttattttttgttttggcttttctgtttattcttatttatgGAGAACTGCACATGTATGTGAACATCCTTGtcttttctgaaataaaaaagcaaatgtaaacTGCCA

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26695 lncRNA upstream 64507 7585473 ~ 7591526 (+) False LOC122331592
TU26696 lncRNA upstream 64507 7585473 ~ 7591526 (+) True LOC122331592
TU26666 lncRNA upstream 246493 7409238 ~ 7409540 (+) True G17867
TU26661 lncRNA upstream 257568 7398239 ~ 7398465 (+) True G17862
TU26660 lncRNA upstream 263161 7392591 ~ 7392872 (+) True G17861
TU26754 lncRNA downstream 94791 7820310 ~ 7820640 (+) False slc27a1a
TU26758 lncRNA downstream 99667 7825186 ~ 7825842 (+) True G17928
TU26760 lncRNA downstream 103965 7829484 ~ 7829860 (+) True G17930
TU26763 lncRNA downstream 115524 7841043 ~ 7841669 (+) False LOC122341274
TU26765 lncRNA downstream 116820 7842339 ~ 7842968 (+) True G17934
XM_043229085.1 mRNA upstream 843 7649629 ~ 7655190 (+) True chmp6a
XM_043228545.1 mRNA upstream 7087 7619650 ~ 7648946 (+) True ttyh2l
XM_043229148.1 mRNA upstream 70435 7583354 ~ 7585598 (+) False LOC122331592
XM_043225518.1 mRNA upstream 281569 7362916 ~ 7374464 (+) True hs3st3b1a
XM_043234879.1 mRNA upstream 355300 7294957 ~ 7300733 (+) True LOC122341489
XM_043232298.1 mRNA downstream 60597 7786116 ~ 7796653 (+) True LOC122334406
XM_043232334.1 mRNA downstream 75777 7801296 ~ 7807762 (+) False ptger1c
XM_043232326.1 mRNA downstream 79160 7804679 ~ 7807762 (+) True ptger1c
XM_043232314.1 mRNA downstream 82724 7808243 ~ 7821078 (+) True slc27a1a
XM_043234650.1 mRNA downstream 113437 7838956 ~ 7841570 (+) True LOC122341274
TU26266 other upstream 1099283 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 1099283 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 1461011 6192740 ~ 6195022 (+) False LOC122341437
unassigned_transcript_276 other downstream 224242 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 224285 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 225335 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 234552 7960071 ~ 7962295 (+) False LOC122341279
TU26834 other downstream 239230 7964749 ~ 7966194 (+) True G17988

Expression Profile