RNA id: XM_043235716.1


Basic Information

Item Value
RNA id XM_043235716.1
length 708
RNA type mRNA
GC content 0.46
exon number 10
gene id alkbh7
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12770572 ~ 12772182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGTCCTCGACAAAATGACACTGCTAATTAGAGTATCGAAACAAGGACAGAGGAAAGCTTTCCATAATCCCTTACTGTATAGGTTTTTATCGGAGAGCACGGATTTACGAAAAGGCCCCGAGAGCAAAGAGGGCTGTAGTTGGTTGTACGGATCGTCGCAGGAAATTTTATCCGTAGTGCGTGGGCATGTTGAAGTTAGACATAATTTCATCAGCGAGGAAGAGGAGAATGCCCTTTTCAAAGAAGTGGAGACAGGACTTAGAAAACGATACGAGTTTGACCACTGGGACGACGCTATTCATATGGCTACAGGAAACAGAGCGCTGCAGTGGGGACTTAAGTGTGAAAGTATCCTAAAGCGTGTGAGAGAGGTAGCTTTTCCTGAAGGCAGTCCACTGCTTGGGCCAATTCATGTTCTGGACCTGGACAGAGAGGGCTTGTATCAAACCAGCATCGACAGTGTGAAGTTCTGTGGAAGCACCATTGCAGGACTGAGCCTTTTGTCCGATAGTGATGCGATTGGTCCCGAAAACAAATCCACAGACTGGGTGGACTTGCTTCTGAGTCATACCActttatatattgtaaaGGATGGCCGATTTAAATTCACCCATGAAATCCTGGAAAGAAGAAGAATCCTTTTCTCAGGACGGAAGGTACCACGTCATCGCCGCATCTCTGTCATCTGCCAAAACCTGCCTGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29141 lncRNA upstream 84201 12682818 ~ 12686371 (+) True G19575
TU29145 lncRNA upstream 89007 12681258 ~ 12681565 (+) True G19579
TU28784 lncRNA upstream 256851 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 256851 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 520575 12246208 ~ 12249997 (+) False LOC122341822
TU29234 lncRNA downstream 225035 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 233628 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 287978 13060160 ~ 13061606 (+) True G19627
TU29211 lncRNA downstream 288935 13061117 ~ 13072599 (+) True G19636
TU29199 lncRNA downstream 299951 13072133 ~ 13076694 (+) True G19624
XM_043228192.1 mRNA upstream 90815 12678396 ~ 12679757 (+) True ier2a
XM_043225909.1 mRNA upstream 93909 12661681 ~ 12676663 (+) False LOC122329583
XM_043225918.1 mRNA upstream 93909 12662286 ~ 12676663 (+) False LOC122329583
XM_043225889.1 mRNA upstream 93909 12662299 ~ 12676663 (+) False LOC122329583
XM_043225899.1 mRNA upstream 93909 12662536 ~ 12676663 (+) True LOC122329583
XM_043229474.1 mRNA downstream 123144 12895326 ~ 12900216 (+) True LOC122332168
XM_043229415.1 mRNA downstream 200295 12972477 ~ 12974627 (+) True LOC122332118
XM_043234624.1 mRNA downstream 331094 13103276 ~ 13107847 (+) True aldh3b1
XM_043234628.1 mRNA downstream 340295 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234772.1 mRNA downstream 343849 13116031 ~ 13129608 (+) False carm1
XR_006250478.1 other upstream 241769 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 256851 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 256851 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 457582 12303364 ~ 12312990 (+) False nbr1b
TU28690 other upstream 669720 12092603 ~ 12100852 (+) True LOC122342134
TU29192 other downstream 63199 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other downstream 114975 12887157 ~ 12888061 (+) False LOC122332158
TU29613 other downstream 926392 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 1141441 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1277308 14049490 ~ 14053032 (+) True G19973