RNA id: XM_043235722.1


Basic Information

Item Value
RNA id XM_043235722.1
length 2775
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC122341977
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9667567 ~ 9672804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttctcctggaGCAGCCTCTGGACAGTCACTAATCTGAAGGCAAAGGCAGAGGCGACACGTTTATTTATTCGCACGCCTCAACCGCGCTTTTGTCTGGTCGACCCTCAAACACTTACAATATGCTGCATTGTTTTTATGGACTTGTTTGTCTTTCGGCACTTTTAGCGTTCGCGACGTTCGCAGgAGCTCAGACTGACTGCCCTGTTCAGCTCAACCCAGAGAGAGTTGTTGTGAGACACGGCGGTTCAGTTACAGCTGACTGTAGCACTTCAGTCCAGCATCAAGGGATTGGATGGGAAGCCAGTCAGGGAGCAGTGTCCATGATCACAGACAAGAGTCTGATCACATGGAGAGTGTCAGAACTGACAGAATGGGACATTGAGCCATTTTGCTtcataaactataaaaaaggAGATAAGCTGCATCAGTGTTTAGTAAAGCTCCCAGTCACTGTTTACAAGACTCCAGACAGTGTGTCCATCAGCACTGTGAATCACAGCGGACCAATGATGGAGGGAAAGGAGTATAAGCTCCAGTGTGACGTTCTCGGTGTGGCTCCTGTTCAGTATCTCACTGTCAAATGGTACAAAGGACAGACTCTGCTGAATCAAACCACCTTTAATGACAACATCAAGACTCCAGTGAATAAAACTGCTACACTCCTGATCCGTCCAGACCGAGCTGATGATGGAGCTCAATATAAGTGTGTAGCAGAGCTGGTTCTGGGAGCAGAAGGACCTTCTCCTACAGAATCTGCTTTCAATGCTGAAGTTTACTATAAACCAAAATACTCCATTTCAACAGAGACCATCTTTAAAGGTGATGATGTCCTACTAAATTGTACAGTGAAGGCAAACCCGGCTCCTACGTACATATGGGATCATCTGAAAGAGACGAGCAGCTCCTCAGTTCTTCAGTCCTCAGAACTCAGTCCAGGAAACTATACATGCACCGCCACAAACACTCGGGGAGGAGACAGCAAAGTGTTCATCATCAAATCTAACGACCAAACCACATTCTGGGCTATTATTTTATCCGGCGTGGCAGTGATAGTGGTGTTAATCATCTCTTATTTGATATTCAAGTTTAATTCTTCTCCAAATTCTATCATTTGATTGACGAGAGATGACCTCAAAGTGGGATATTCTCCTCAGggagataaaaaacaaaaacttgatcACGATggttttttgtaatatatatatataaagggatagttcacagtAGCCATCCAAAACGTAGATGaaattgtttctttatcagaacagatttggaaagaTTCATCTTTACATCGTTTGTTCACCAATGGatcccctgcagtgaatgggtgctgtcaaAAGGaggatgaaaacatcacaataatcctgtccatctattaatttttttaaattcatgtatTAAGTGTTTTTGCATCCGTGAGGCTCTAAATGCTAAACTCTAAACCATCGCTTCAGGCCAAagtgtatattaataaaacaacacttcctccagtgaaaacgTCCATCTGTTGTCCTCTTACGTCACAATGCAccgacatatttgtttagaaccaTATTGTACTGTTTTCACTAACAAAGCAGAATTGTATTatcgggtgaactattcctttaatgaacTGACTTGATTTTGCGTCCCGTTACTGTACatcactatttttaatttaaaatagttttcattttgaaaagctATTCATTTAAGATCATTATAAATAGTGTTTactttgttgcattttaatggGTGGCTATATTAATTAGGTACTGAATATgtactgtaacattttttttacagaaatgaatgTCATATTGCATGCTTCAAATGTAATAACAGCAACAGAATCAATGCCTATTTAGTCTGTTtcgaaaaagttattttttctcTACAAATTGTATTGTCATCAATGTAAAGCTTCACTTGCGTTTTCACCCGTTGCGCTTAATCGATTTACCGTAGTTTTATAccctcattttattttcatactgaGGTTGAGGGTTGaggcatttttaatcaataggttttttactgttatgtattttttataaaacaacaatagaTTCTTTTGGGGGGTTTTTCTGTGGCGCAAAAGCAATCAATGGCATGCTATGAGTGCTTCAAATACGCTATTTGTTCAAACTAAACTTAACTTTAGCACTAACTAGCTATAAACCGTTTGAGCTAGCAACTGCAGGCTAATGCATTAACATAACAAGAATCCAGAATCCAACAAGAACCAATATAGCTGAACTGAGAAAATTAGTCTTGATGTCAGTAGCCAACAACTTTAAACCAGCCTGCACAGAATCTATTTTAcgaaataaatagtaaaataattgcTACCTCAAATAATAATAGGTACTAAGAGGGTTGTACATCCCTCGAATTGGTCCGCAAGCATATACAAAGTTCCTTTTCGATACTGAAAGTTTTGCtcacttccttttttcttttcctcttcacCTAATGGCATGATGAGGTCAATGGAAAAACTATTATCACATGCTTATTTCTCATAGCTAAGATACTCTGTATGGTACATATAAAAGCTGAAGATGTTGATCGAAGCTTCACCGTGATGCTAACGCGTCACAATTTGGATTTGAACACTACACAGACTGTTTTTCAGACTCTGACTACTTTATTGTATCTGAATGTGTTTGAATAATGTGGGAAGACAAGTTTGTATAGGAATGTTTCTTCCTCTGAATGTATGGTAACGTTGCTTTTtcgtgtatttttgtttgtgtgctttttttacTAATACAGAATTTGTGAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27582 lncRNA upstream 64503 9602642 ~ 9603064 (+) True G18470
TU27569 lncRNA upstream 91665 9574881 ~ 9575902 (+) True G18458
TU27568 lncRNA upstream 91665 9575241 ~ 9575902 (+) False G18458
TU27567 lncRNA upstream 91873 9575241 ~ 9575694 (+) False G18458
TU27566 lncRNA upstream 93078 9574289 ~ 9574489 (+) True G18457
TU27622 lncRNA downstream 102516 9775320 ~ 9784458 (+) True G18502
TU27627 lncRNA downstream 181799 9854603 ~ 9859173 (+) True G18507
TU27641 lncRNA downstream 192982 9865786 ~ 9943153 (+) True G18517
TU27691 lncRNA downstream 238153 9910957 ~ 9911612 (+) True G18549
TU27728 lncRNA downstream 361337 10034141 ~ 10103461 (+) False G18574
XM_043233746.1 mRNA upstream 962 9656552 ~ 9666605 (+) True icam3
XM_043235558.1 mRNA upstream 76276 9588010 ~ 9591291 (+) True eif3g
XM_043235559.1 mRNA upstream 81349 9582374 ~ 9586218 (+) True p2ry11
XM_043235555.1 mRNA upstream 85182 9577725 ~ 9582385 (+) True ppan
XM_043235676.1 mRNA upstream 180379 9428864 ~ 9487188 (+) False olfm2a
XM_043235157.1 mRNA downstream 7094 9679898 ~ 9692637 (+) True mgrn1b
XM_043235156.1 mRNA downstream 7094 9679898 ~ 9692637 (+) False mgrn1b
XM_043235155.1 mRNA downstream 7094 9679898 ~ 9689708 (+) False mgrn1b
XM_043233977.1 mRNA downstream 20145 9692949 ~ 9697915 (+) True aanat2
XM_043235218.1 mRNA downstream 82377 9755181 ~ 9761184 (+) True mpg
TU27323 other upstream 481907 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 481986 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 1104191 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 21828 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 66992 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 126011 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 353014 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1079955 10752759 ~ 10781853 (+) False kcna7

Expression Profile