RNA id: XM_043235746.1


Basic Information

Item Value
RNA id XM_043235746.1
length 2572
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC122341982
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4908351 ~ 4936740 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTAGTGACTATTAATTAAAAGgaaatgctacttttttttctaaagtgtaagtgcaataaatattgcatattactTATAATCAGTCAAACAATTAGGTTTATTTTACGTTTATCTTGTTCTTAAATATTTGACTTAAAGACTTGcttaaatgactgaaattatgatatataaacactttatttgTTAGAACTAATCATGCAATCAATTATTTCTCCTCCAGTTGTGTTTGCTGTTGGTTGACAAATCTTTTCAGGTTTAGTGGGCTCTCAAAGCTTGATAAACGTTTTCTGTCAAGTCGCAGTTGGATGCACCTGAAACTGTGACACATGCAACAAACCAGTAGCCCCTCACTGCAGAACAAATGATCCAGGGGGCGGAGATGaggttttctaaataaaaatgctagatcttattatttttcatttattttagaagaaaacaaacgtAACCCCTGGTATTTATTCCATACAATgactaaattaaagaaaaataatgcgTCAACAGGTGCTTACATTCTCTAAAATCACAGCAGTTACTTCCAAGATCAATACTATACAATCCCCTGAGTATACTGATCCccttacacttgaatgtttgtagtatatattttttatattttgcacgttttatattttgtatattgtatataattctctttattatctgtcttgtcttgttatcgtgttgcagtGTAGAgcttttgtcactaaaacaaattcctctgattctgattctgattctgaggAAGAATTCCGCTCATTCTCTATTATgggagaggaagaattgtacaaacttgttaaatcatctaaaccagcaataTGTTAGAACCTATTccatttaaactattaaaagagctgcttccagaagtcatagatcctattttgtctattattattgtcattaggatatgtccccaAAAACTGTTAAGACTCTTCTTAAAAAAAcgcatcttgaccccaaagactcaATGATTAACGACTACAGGCAGATCTTGAGTTTAGATCTAGATTagatttagaccgtaccatagtactgagactgctctcattagagttatcactttttattagtgctatttGGTCTCCAACCTCTGGCCGTTTGATAATACCAAGGATCCTTTTCCTGTTTAGCTCCCAAACTTTAGAACAATCTCtctaacactgttcgggaagcagacacactctgtcggTTTAAATCTAGATCACACATCTCTTAAAGACACAAGATTCACTGCAGGATCAGACTGAGACATCACATGCTGGAGACAGATTATCACCAGAAGTAAAAGGTTTAGTTCTTGGAGGACTTCAATCATCCTGATTTCAGTAGCTGTTGTGCTCAGTGAAAACAGGGGGGCTGATGACAGCTAGACTGTTTTGGAAAGAGGAAGGACCATCGTGTGCAGGTTTAATCATCTTATGATGCTCAGAACTATAAAAGAGCTGATAGGGGAGTGTGTGTTGACAGAGAGTCGCATCCTGACCACCTCAACAAAGCATcgagacagaaacagaagacCAGCAGATCCTTATCGTTTCACTGCTATCGGTCTTATGGATATCTCCAAGAATAGGGATGTCTCCAAGCCTAAAGCGAGCAGCAAGGTCGCCACGCGAGCCCCGGCGCCTGGCAGTCCCCACAAGGGCCCACCCAAGTTCAAACAGAGGACAACGCGCCAGTTCAAGAGCAAGCCGCCCAAAAAGGGTGTCGTTGGCTTTGGTGAAGAAATTCCTGGAATGGAGGGATTGGGAACTGacTTTAATGTGATCTGTCCGTGGGAGGCGTACAGTCACCTGGAGTTACATGAGCTGGCCCAATACGGCATTATTTGAGGTCACTTCCTGTTCCCACATCCCACTGAACAACATCCTGCACCTTAACatgtcttttaaataataatattcacacAGCAATATCTTTGGTTGATGTTCGGTTAGTTACGCAGAGACAACTTTTACCAGCAGTTATCAGTCATCAATAACAAAACGGACGTTAGTTAATCTACCTCTTCAAACTGAAATTTCATGCAGAACTAGATTCATTTCACTCTATCGCCAATtctaatttcagatttttactgtattgttgtACGTGttatagaattttaatattgacATGCAATTGACATTTTAGGTGTCAGCTTTTATTTCCATACGATCCTGAAAAAAACATAGCATGGTAGCGTgagtttctcttttcttttctttctttttttgaaatagtttttcattttgtcaAGTTGCAAATGTCCAAAATGAGTTTGGACACCGCGGGGTCTCAGTGTTTGCCCATAGCGCGAGTACTGGGAGCAGCTCTCTGTGAGAGCTCGGCCCAGTTTATTGGCCTTATGACGCTGGAGAGCCGTGCAAGAGTGAGTGCGGCTCATACCTGGGAGAGCAGAAAAGATTTGGACATAAAATAAAGTCTGATTGTTTTCATACTTTCAGTCTATCTGAGTAGTTTCTGAACCTCTGAAACATTATGCAGTCTGTAAAGCAAGATGGTTTACATAGGCCTTCAGGATTTTCAGCCAATCAAAACACTTAAATCATTCTCAAAATATATCAGTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250507.1 lncRNA upstream 15952 4912694 ~ 4914493 (+) True LOC122341984
TU25293 lncRNA upstream 24125 4905656 ~ 4906320 (+) False G16981
TU25289 lncRNA upstream 27166 4898839 ~ 4903279 (+) True LOC122333539
TU25378 lncRNA downstream 55256 4991996 ~ 5035379 (+) True G17026
TU25379 lncRNA downstream 55256 4991996 ~ 5009423 (+) False G17026
XR_006250492.1 lncRNA downstream 270504 5207244 ~ 5211693 (+) True LOC122341773
TU25426 lncRNA downstream 271916 5208656 ~ 5208867 (+) True G17059
TU25427 lncRNA downstream 274294 5211034 ~ 5211465 (+) False LOC122341773
XM_043235479.1 mRNA upstream 35838 4892115 ~ 4894607 (+) True LOC122341832
XM_043235366.1 mRNA upstream 99964 4827437 ~ 4830481 (+) True LOC122341768
XM_043229580.1 mRNA upstream 109789 4812939 ~ 4820656 (+) False wdr48b
XM_043235851.1 mRNA downstream 15761 4952501 ~ 4957859 (+) True si:dkey-282h22.5
XM_043235852.1 mRNA downstream 15780 4952520 ~ 4957859 (+) False si:dkey-282h22.5
XM_043235850.1 mRNA downstream 21272 4958012 ~ 4961980 (+) True antkmt
XM_043235088.1 mRNA downstream 26821 4963561 ~ 4983738 (+) True xpo6
XM_043235385.1 mRNA downstream 50700 4987440 ~ 4991394 (+) True nme4
TU25292 other upstream 23479 4905656 ~ 4906966 (+) True G16981
TU25278 other upstream 383878 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 397147 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 443981 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 471310 4458698 ~ 4459135 (+) False G16979
XR_006248137.1 other downstream 620268 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 660359 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 1161461 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 1256000 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other downstream 1256000 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile