RNA id: XM_043235752.1


Basic Information

Item Value
RNA id XM_043235752.1
length 3138
RNA type mRNA
GC content 0.56
exon number 18
gene id recql5
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26990895 ~ 27007803 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCGCGTGACATCATCTCCGCGCGCCGAGGAGTTCAATGAAAGTTGAGTGAATGTTGAGATTGTGGCTATAGTTATGAGTGCCGTTCAGCGGGCGTTAAAGAAACACTTCGGATTCGACAGCTTTCGATCTCGACAGCAGGAAGATGCGGTGAAAGCAGTGCTGAAGGGGGACAGGGATGTGTTCGTCCTCATGCCCACTGGAGCAGGGAAGTCTCTGTGCTATCAGCTGCCCGCTCTTCTGGCCAGCGGCATTACTCTGGTCATCTCTCCTCTGATCGCCCTCATCCAGGATCAAGTGGAGCACCTGAAAGCTCTGAATGTTCCCGCGCGCTCCATCAACTCCAAGCTCCCCTCGGCTGAGCGGCGGCAGATCCTGGCGGACCTGGAGAGCGAGAGCCCCCGGCTCAAGCTGCTCTACATCACTCCGGAGATGGTGGCGTCCCCGTCCTTCCAGCCCTGCCTGAGCTCCCTGCGCGAGCGGGGCCTGCTGGCGTACCTGGCCGTGGACGAGGCTCACTGCGTCTCTCAGTGGGGACACGACTTCAGGCCGGACTACCTGAAGCTCGGGGCCCTGCGCTCCCGTCTGCGGGGGGTCCCCTGCGTGGCGCTGACGGCCACGGCTCCCAGGAGAGTGCAGGAAGACATCGAGCGCTCGCTGGAGCTGCGCTCGCCGCTCGTCTTCGCCACGCCCGTTTTCCGCGAAAACTTGAAATACGACGTGATGTTCCGGGATCTGCTTCCTGACCCTTACGCGCACTTGCTCGCGTTCGCCAAAGAGGCTCTGGGTGGAAATACAGCGGAAAAGGGCTGTGGGATCGTTTACTGTCGCACCAGAGAGAGTTGTGAGGAAGTGGCTCATAAGCTGACTAAACTGGGAATCGCAGCCAAGCCCTATCACGCAGGGCTGAAGGCGGCCGACCGCACCGAGAGTCAGACTGACTGGATGGCCGATAAAGTGCCTGTTATTGTGGCCACCGTCAGTTTTGGTATGGGAGTGGACAAGGCCAACGTCAGGTTTGTCGTTCACTGGAACCTGGCGAAGTCTTTGGCCAGTTACTATCAGGAGTCGGGCCGAGCCGGACGGGATGGACTGCCGTCGTCCTGCAGGATATACTACTCTCCCAAAGACAGAGACCAGCTCAACTTCCTCATCCGCAAAGAGATCGCCCGCAAACAGGAGAAGCGCGGATCAGAGAAAGAGCAGGACAAGGCGCCCATCCTGGACTTCGAGGCGATGGTTGCTTTTTGTGAACAAGAAGGGTGCAGACACGCCACCATCTCACAGTTTTTTGGCAACCAGAAGCCCGACTGCGCCGGAGCGTGTGACTTCTGCCGTGACCCCAGCCTGGTGCGCGCCCAGCTGGCGAGAGCAGCCGCCCTCAGCACCAGAACCGGCCCGGCACAGAGCGCGGGGCCCAGGGGGCCCTTCGGCTTTGACCCGGAACTCTACGCCGGAGGCAGGAAGGGTTACGGCTTTGAGAGGTATGATGAGGAATGGGGCAATGAGGAAGATGACTCggagaagaggaagaaagaatTCGGAGATCTCTTCAAGAAACAGATGAGCATGAGAAGGAGTTCGGACGTGGCTAAAGAGACGTTTGCTCCACCAGACGCCGACTGCATGTTGAAGGATGCCAGCAGTCAGAGAATCCCCAGGCTCACGGTGAAGAGCAGAGAGCACTGTCTGTCTCTCCTGCAGGAGCGCCTGAGCAACCACAGGGGGGCAGCCGAGCTCTCACACAGCTCGGACACTCTTGATCAGGCTGTAGAAATAGAGCACGAGATCTTCAGAGCCAGTAAATCAGCAAACCTGTACAAGGCCGCAGTCCTCAAGAGAGTGTCAGAGATGAAGAAAAGTGCAGCTGAAGAGAAACGGCCTGACCCGAATGAAGAGACGGCAAGCTGCTCTTCATCATCTCAACCTCTAGACGGCTTCACTTCAGCCTCTCAAGTCTACTCACTGAAGAGGAAGCGCATAGGAGCGGGATTTCGCGGCTCGTCCGGCCTGTTTCAGACAGCTGGAGATCTTCTGAAGAACTCTCAGAAGGAGACGCCTGCCACGGACAAAACACCTGGAGACCCCATCTGTGAGGAAGAGCAGGAGGAGGAAACGGAAAGAACACGGAAGAGGAAAAGCGGCGACTCATCTCCCATCAAAGCCAAAAGCAGCCCCAGTAAAAGACTCACTAAGAAACAGCAGAAGCTGGCAGAAGCGGCCAAAGACACGCGTCGCATCTCGCAGTATTTCGGAAAAAAGCAAGTGGACACCGCTCAGACGAAAGCAGGAAGCGTTACGTCAGAGCCCGAGGAAGAAGTCCCTCAGAATCACTCGTCTTTGCTAAATAACACAGACTTGATAACGAAGAACAGCGCAGCTACGGAGGCAGAAGGCGTCTCGGAGAAAGTCACCGCCGCTCTTCTGCACACGAGTGCGTCTGCAGAAGGGACGCCCGTCCGAGACGAGATGCCCATCAACACTGAAAGGACGGAAGGCCAAGCGCTTCGGGGAGAGAACCACGAACCTGACACCCAACAAATATCACCAAAACAATCACGTGAGGACGGATCCCCACCGCCTCCTGCGAAGCGCAGCCGCGTGATGAAGGACACTAAGAGAGTGACCTTTGACCCGGTGGTGCAGGAGACGCAGTTTGACGCCGTGAACGGAGACGCCGCTGAAATCTCGCCAAAGCCTGTGACGCTGAAGGAAGCTGCTGATATCGTGGTGCGATGCCTGGATCCCTTCTACAAAAAGGGCAAATTTGCAACAAAgTGAAGACGGAAGCGAAGAGCCTCATCAAGGGCTTCTTCAGCAGGATTCAGCGCTGCGAGAGCGAGACGGACTGGAGACACTTGAAAGTGGAGGACAGATAGCCATCTTCGTCATTATGTCCCTTCGTCCAAACCTCTGGAGCTGTGATCCTTTCATTGCCCGAGATGCTGCTGTATTTCTCAGGTGTATGGTGACGGCCGGAGCGTATATTGCACATTAATACGAGCGGCTGAAAAtgccgttttattttttgaagacCGCAATAGCTATAATGTAGCATTAGTTGCTTGTAATGCACTCGGTGTAGTATGAACTGTGATGAAAACTACATTAAAAGGCAAGTGTGCACAAATGGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35353 lncRNA upstream 44898 26944207 ~ 26945997 (+) True G23709
TU35316 lncRNA upstream 148237 26842189 ~ 26842658 (+) True G23694
TU35315 lncRNA upstream 149767 26840773 ~ 26841128 (+) True G23693
TU35309 lncRNA upstream 156100 26825108 ~ 26834795 (+) True G23692
TU35366 lncRNA downstream 4796 27012599 ~ 27022734 (+) True G23714
TU35367 lncRNA downstream 4796 27012599 ~ 27022685 (+) False G23714
TU35388 lncRNA downstream 15525 27023328 ~ 27037645 (+) True G23727
TU35360 lncRNA downstream 22065 27029868 ~ 27044382 (+) True G23712
TU35394 lncRNA downstream 39135 27046938 ~ 27047525 (+) True G23733
XM_043234959.1 mRNA upstream 864 26983161 ~ 26990031 (+) True LOC122341528
XM_043234960.1 mRNA upstream 864 26983161 ~ 26990031 (+) False LOC122341528
XM_043234961.1 mRNA upstream 864 26983215 ~ 26990031 (+) False LOC122341528
XM_043228491.1 mRNA upstream 8998 26972744 ~ 26981897 (+) False si:ch73-364h19.1
XM_043228499.1 mRNA upstream 8998 26972746 ~ 26981897 (+) True si:ch73-364h19.1
XM_043228372.1 mRNA downstream 171275 27179078 ~ 27184592 (+) True nptx1l
XM_043233411.1 mRNA downstream 274024 27281827 ~ 27282406 (+) True LOC122335546
XM_043232716.1 mRNA downstream 299837 27307640 ~ 27386062 (+) True LOC122334820
XM_043233156.1 mRNA downstream 428009 27435812 ~ 27438843 (+) True LOC122335316
XM_043233293.1 mRNA downstream 450988 27458791 ~ 27460139 (+) True rasd4
TU35317 other upstream 143538 26846723 ~ 26847357 (+) True G23695
TU35298 other upstream 189500 26798811 ~ 26801395 (+) False srsf2b
TU35581 other downstream 274046 27281849 ~ 27282406 (+) False LOC122335546
TU35969 other downstream 1507840 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 1585012 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 1699510 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 1836038 28843841 ~ 28846292 (+) False LOC122335482

Expression Profile