RNA id: XM_043235764.1


Basic Information

Item Value
RNA id XM_043235764.1
length 990
RNA type mRNA
GC content 0.53
exon number 7
gene id rrp7a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8227784 ~ 8229614 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAACTACAATTCCCAGAAGCCGCTGTCTGTTTCCGGTGACGTATGTAAACTGTAAATGAAGATGGCGCTGTCCGGAGATCAACACGCGTGTGTCATACCTGGAGGTTTTACTGtgCTGTCTCTGAGGTTCAGTGAGGATGACGCTCATGCTGCTcttcatcagctgtttgttAAAGAGCACCGGGTTCGATCGGAGTCCAACACGAACCGACCGCTGGACCGAACACTGTTCGTTCTGAACGTTCCTCCGTACTGCACTGAgagtgttATATCGGACATCTTCAGCCGCTTCGGTCCGGTGCAGTCTGTGGAGCTGAACGAGAAGCCAGGAGCGTCCGAAGTGAACCACAGCAGTTTGTCCAGATTCTTCATCCCCAGACAGAGACAGtgtttcAGAGTGGCCTACATCGTGTTCCAGCACCCGTCTGGAGTGAACGGCGCCAAGCAGCACCCAGCACACACCCCACTGACCGTCTGCAGCGGACACACACCCCTCAGAACCGGCATAcacaagtggaTCCAGCAGTACTCAGACTCACTGTTCAGGGCCTCATCGCTGCAGCAGGATGTGGATGAGTTCATGAAGGACTACGACACACAGAAGAAGAAGGAGGCGGAGCGTCAGAAGCAGGAGGCggagcagcagcaggaggatgaggagggcTGGGTGAAGGTGACGAAGGGCAGCCGAGGAGTGAAGGTCCGCCCACACAGCGAGACGGCCAATGAGAGGACGCTTCAGAAGGAGCAGGGGAAGAAGGAGCGCAAGGAGCTGCTGAACTTCTACACGTGGCAGCACcgaaacacacagaaagaacATATCGCTGAGCTCAGGAAGAAGTTTGAAGAGGACAAACAGAGGATCGCTGTACTGAGAGCACAGAGGAAATTCAGACCCTACTGACTCATCATACCCACAATGCTTTGCACCTTGTACTGTTTGGTTACATGAacattaatttgtaataaagtCTACAGTGAGTCAATCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14545 RRP7; ribosomal RNA-processing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26881 lncRNA upstream 10567 8215252 ~ 8217217 (+) True G18010
TU26897 lncRNA upstream 10753 8216524 ~ 8217031 (+) True G18025
TU26856 lncRNA upstream 118015 8015637 ~ 8109769 (+) True G17998
TU26887 lncRNA upstream 124367 8103050 ~ 8103417 (+) True G18016
TU26845 lncRNA upstream 135542 7991099 ~ 8092242 (+) False G17993
XR_006248186.1 lncRNA downstream 82775 8312389 ~ 8314490 (+) True LOC122331402
TU26949 lncRNA downstream 244679 8474293 ~ 8490417 (+) True G18055
TU26937 lncRNA downstream 284535 8514149 ~ 8742302 (+) False G18048
TU27001 lncRNA downstream 442047 8671661 ~ 8675886 (+) True G18092
TU27278 lncRNA downstream 651584 8881198 ~ 8882122 (+) True G18261
XM_043235766.1 mRNA upstream 430 8219924 ~ 8227354 (+) True poldip3
XM_043235765.1 mRNA upstream 589 8219924 ~ 8227195 (+) False poldip3
XM_043233971.1 mRNA upstream 20703 8201599 ~ 8207081 (+) True ndufa6
XM_043233969.1 mRNA upstream 27306 8189453 ~ 8200478 (+) False triobpb
XM_043233967.1 mRNA upstream 27306 8189457 ~ 8200478 (+) True triobpb
XM_043225548.1 mRNA downstream 66518 8296132 ~ 8300760 (+) True wbp2nl
XM_043234658.1 mRNA downstream 263807 8493421 ~ 8494226 (+) True LOC122341286
XM_043234659.1 mRNA downstream 264081 8493695 ~ 8498279 (+) True LOC122341287
XM_043229399.1 mRNA downstream 314677 8544291 ~ 8551147 (+) True LOC122331854
XM_043235544.1 mRNA downstream 322472 8552086 ~ 8556310 (+) True LOC122341872
TU26858 other upstream 74959 8150770 ~ 8152825 (+) False LOC122341282
TU26861 other upstream 74959 8150770 ~ 8152825 (+) False LOC122341282
TU26879 other upstream 167927 8056659 ~ 8059857 (+) True G18008
TU26834 other upstream 261590 7964749 ~ 7966194 (+) True G17988
TU26833 other upstream 265489 7960071 ~ 7962295 (+) False LOC122341279
TU26907 other downstream 30470 8260084 ~ 8563376 (+) False LOC122342110
TU26932 other downstream 283735 8513349 ~ 8516454 (+) False G18048
TU26936 other downstream 283735 8513349 ~ 8524734 (+) True G18048
TU26987 other downstream 314846 8544460 ~ 8551151 (+) False LOC122331854
TU27323 other downstream 954914 9184528 ~ 9185660 (+) False LOC122341719

Expression Profile