RNA id: XM_043235772.1


Basic Information

Item Value
RNA id XM_043235772.1
length 2332
RNA type mRNA
GC content 0.48
exon number 13
gene id mpp2a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12477842 ~ 12490062 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGTCCCACCTACTGAGACGTTTGAGCGTTGCCCCTTTATGCCTACGCAACGGCTAGACTCTGATTTGATGCTTTGTAGCGGTTCAGACACCTCTCACATAATCAAAACAACGTTACGAAGCGTGTACGATACGGGAAAAGATTTCAAACATCATGCCTGTGGCAGCCACCGGCACAGAGCATGTGCCGCAGGTGCTGGACACTCTGAGTGACAGCGCCAGCTCCACCACTGCCAATGACCTGGACCTCATCTTCCTCAAGGGCATCATGGAGAGCCCAGTGAGCGCAGAGAGTTTGGAGGAGACACGACTGGAGGCCGTGAGGGACAATAATGTGGAGTTGGTGCAGgacatcctgagagagctgaGCCCCTTCACGCACCGCAGCAACACCGCCGCAGAGCTGTCCCGCATTCTCAACCAGCCGCACTTCCAGTCTCTGCTGGAGACCCACGACTCGGTGGCCTCTCAGACGTGTGAGACTCCGCCCTCGAGCCCCTGCGCTTTCATGGAGCCGCCCATCAACCCTGCACCGGTGCCAGCTGATGCCATACGCATGGTGGGCATCCGCAAAGTGGCTGGAGAGCATTTGGGTGTGACGTTCCGTATTGAGAACGGAGAGCTGGTGATCGCCCGCATTCTCCACGGGGGGATGATCGACCAGCAGGGTCTGCTCCACGTGGGGGACATCATCAAAGAGGTGAACGGGCGAGAGGTGGGTGACGACCCTCGTGTGCTGCAGGAGATGCTGCAGGAGGCCAGCGGCAGTGTGGTGCTCAAAATACTTCCCAGCTACCAGGAGCCGCATCCCCCCAGACAGGTTTTTGTGAAGTGTCACTGTGATTATGACCCTGCCAATGACAACCTCATCCCGTGCAAAGAGGCGGCACTGCAGTTCTCCAGCGGAGACATTCTGCAGATTGTTAACCAGGAAGACGTGAACTGGTGGCAGGCACGTCATGTAGAGGGAGGCAGCGCTGGCCTGATTCCCAGTCAACTTCTGGAGGAAAAGAGGAAAGCTTTTGTGAAGAAAGATGTTGATCTTTCACCAGCAGCCAATCTATGTACTGGAATGGTTggcaagaagaagaagaaaatgatGTATCTAACTACAAAAAATGCAgATTTCGACAGGCACGAGTTACTGATCTATGAGGAGGTGGCGAAAGTCCCACCTTTTCGCAGGAAGACGCTGGTTCTGATTGGTGCCCCTGGAGTGGGCCGACGGAGTCTGAAGAACAAGTTGCTCGTGTCAGACCCTCAGCACTACGGCACCACCGTCCCCTACACCTCCAGGAAGGCCAAATCAGCAGACAGAGAGAACATGATGTATGCCTTCACATCCCGGAGTAAGATGGAAGCCGATATTAAAGCTGGCCGTTATCTTGAACATGGCGAATATGACGGTAACCTCTACGGCACCAAGATCGACTCCATCCATGAAGTAGTGGAGGCCGGACGCATCTGTATCCTGGACGTTAACCCCCAGtcCCTAAAAGTCCTCAGGACATCAGAGTTTTTGCCGTATGTGGTGTTCATCAAAGCCCCGGAGTTTGAGGTGCTGAAGGCCATGAACAGATCTGGGGTGGAGGCGGGAGTGACCAAACGCAGAACAGACGCAGAGCTGAAGAGGACGGTGGATGAGAGCGACAAGATTCAGAGAGTGTACGGACACTACTTCGACCTCACCATAGTAAACGATGATTTGGAAGAGGCTTACAGGAACCTCAAATCCTCCTTAGAGAAGTTAAAGGGAGCTCAGCAGTGGGTTCCGGTCGGGTGGGTGTTTTAGAGCTCAGCACAGCAACTAGTGGATGATTCATGTGACACTTTATACCAGTGTTAACTGGTTTAAATCATCAACCTCGTGCCAAGGGTGTACACTGATCAGAGAGcttatatgagtgtgtgtgtgtgagtgtgtgaaatCACCATTTACCCTTTAAATACAGCAAACTGATACAAACCTCAGAAACAAGCTACAATCTCATCTTTTTGTTTACAGTAAACATTCTAGTTTCAGTTCAAATGGTTTTTTGAAATCTtagatcttttttattttattttacacacattctttaaaaattcaAGTTCAAAATAATAGTCTTTCTATAGtcaaagaaaaatctaaaaacaaaacaaaacaaaactgtaaagcAAGACTATATTTTGCAGAATATAGCCTGAATCTATAATTTATGATgataaatagtgtttttttgttgtttgtttaaacgtaaccttttcaaaaggttgttagatttatttagtggaatcaaaatcatttttcaatctcaatattttaagaaattaatacttaacagagtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28700 lncRNA upstream 227845 12246208 ~ 12249997 (+) False LOC122341822
TU28736 lncRNA upstream 249322 12227935 ~ 12228520 (+) True G19287
TU28710 lncRNA upstream 342885 12132629 ~ 12134957 (+) True G19274
TU28698 lncRNA upstream 359067 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 359933 12117343 ~ 12117909 (+) False pax10
TU28784 lncRNA downstream 21864 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 21864 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 191196 12681258 ~ 12681565 (+) True G19579
TU29141 lncRNA downstream 192756 12682818 ~ 12686371 (+) True G19575
TU29234 lncRNA downstream 507155 12997217 ~ 13056733 (+) True G19656
XM_043235773.1 mRNA upstream 570 12474069 ~ 12477272 (+) True pyya
XM_043229525.1 mRNA upstream 20933 12456009 ~ 12456909 (+) True hspb9
XM_043233703.1 mRNA upstream 162796 12303364 ~ 12315046 (+) False nbr1b
XM_043233702.1 mRNA upstream 162796 12303365 ~ 12315046 (+) True nbr1b
XM_043228708.1 mRNA upstream 201483 12272640 ~ 12276359 (+) True rusf1
XM_043235143.1 mRNA downstream 29775 12519837 ~ 12528803 (+) True gtpbp1
XM_043235144.1 mRNA downstream 29775 12519837 ~ 12528803 (+) False gtpbp1
XM_043235145.1 mRNA downstream 29775 12519837 ~ 12528803 (+) False gtpbp1
XM_043235146.1 mRNA downstream 29775 12519837 ~ 12528803 (+) False gtpbp1
XM_043225909.1 mRNA downstream 171619 12661681 ~ 12676663 (+) False LOC122329583
XR_006249244.1 other upstream 164852 12303364 ~ 12312990 (+) False nbr1b
TU28690 other upstream 376990 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 643918 11773201 ~ 11833924 (+) True kcnc3a
TU28786 other downstream 21864 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 21864 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 29775 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 345319 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other downstream 397095 12887157 ~ 12888061 (+) False LOC122332158

Expression Profile