RNA id: XM_043235775.1


Basic Information

Item Value
RNA id XM_043235775.1
length 2630
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC122342001
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8835129 ~ 8854765 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAACCTCAGGTATGTGTTGCTTTCTGGAAGTGAAAGGGTGGAGATCACCTGAAAGTTTACATCTGTCAAAAACCGCATTCAGTCTTTAACTTGTTCCCGAACTACCATTCAGATTTACAGACAGCGCCTCATATAGTTTGTGTCTATAGTGATGGCAGAGGCTCACCAGGCAGTAGCGTTTCAATTCACAATCACTCCTGAGGGCATCGACCTACATCTCTCCTACCAAGCCCTTAATCAAATCTACCTCTCCGGACTGAGATCCTGGAAGAAACGCATCAGCAGGATTAAGAACAGAATCATTAAAGGCGTATACCCAGCTAGCCCATCCTCTTGGCTTTTTGTTGTAATAGCAATCCTGGCAACTATCTACATGCAGTCTGATCCATCTATGGGCCTCATTGCTAAGATTCAGGAGCACCTGCCCCTCAGTCTGTCATTGAGTGCTCAAGGCCAGACTGTGCTGTCGGTGCTGTTGTTCAGTACTCTGCTGTGGATGTCTCTCATTCTGGCTCTGAGGTTCTGCCTAAAACTTCTCCTATCATACCACCGATGGATGTTCGAGCAACATGGACGCATTTCTACCAAGACCAAAGTCTGGGCGACCCTAGTTAGGTTGCTGTCTGGTAGAAAGCCATTACTGTACAGCTATCAGACATCTTTACCACATCTGCCTGTACCTCCCATTAAAGAAACTTTGGAAAGAtaTCTGGAGTCAGTGAAACCACTGCTTGATACGGCTGGTTTTCAGCGAATGACAAGACTGGCTGCTGAGTTTGAGAAAAGTCTGGGTAACCGGCTACAAAAATACCTCAAACTTAAAGCGCTGTGGGCCACAAACTATGTTAGCGACTGGTGGGAAGAGTATGTTTATCTGCGGAGCCGGGGTCCCATTATGGTCAACAGTAATTATTATGGCATGGATTTCCTGTATGTGTCACCAACGACTAATCAGGCAGCTCGAGCTGGGAATACCATCACAGCCCTGTTTCTGTATCGCCGCAAAGTCAATAGAGAGGAGCTCAATCCTAGTCGTATTCCTGGTACAGTCATACCGCTGTGTGCAGCTCAGTGTGAGCGCATGTTCAACACCACGCGCACGCCGGGAGAGGAGactgATGTCCTGCAGCATTGGCAGGACAGTGAATTTGTGGCCGTGTACCACCGGGGCCGGTATTTCAGATTATGGGTTTACCGAGCAGGACGCCTGCTGTCACCCAGAGAGATCCAGTACCAGATTCAAAGGATCTTGGACGAACCCTCACCTCCTTCTCCAGGAGAGGACAAACTAGGGGCACTGACAGCAGGAAACAGAATTCCTTGGGCTCAGGCCAGGAAAGAGTTCTTCAGCTCAGGACTGAATAAGAGGTCTCTGGACTGCATTGAAAAGGCGGCGTTCTTCGTTGCCCTGGACGACGACGAGCAAGGCATGAGGGGAGATGATCCTGCCGGCAATTTAGATCGCTATGCCAAGTCCCTCCTGCATGGCAAATGCTACGACAGgtggtTTGATAAGTCGTTCACTGTGGTGGTGTATAAGAATGGCAAGAACGGCCTCAACGCTGAACACTCCTGGGCAGACGCTCCTATAATGGCTCACGTGTGGGAGtATGTGATGACAACCGATAGTTTCCAGTTGGGTTATAATGAAGAAGGTCACTGTAAAGGAGACGTGGCCTCCTCCCTGCCTCCACCTACTAGACTAACCTGGGACATACCTGCCGAGTGTCAGGAGCGTATCGAGCGCTCTCTCGCCGTAGCTCAGGCTATAGCCGATGACGTTGACTTCCATGTGCTGCCGATACAAGAGTTTGGAAAAGGTGCCATCAAAAAGTGTAAAATCAGCCCGGATGCCTTCATTCAGATCGCGCTACAGTTGGCCTATTTTAGGAATCGAGGCACGTTCTCTCTGACTTACGAAGCGTCTATGACTCGTTTATTCCGCGAGGGCCGGACTGAGACGGTGCGCTCCTGCACCAGCGAGAGCTGTGCCTTTGTCAGAGCCCTGGAGGGCGGAGAGAGTAAGGAAGTGTGTCGGCGTCTCTTCCGCACGGCATCTGAGAAACACCAGAATCTGTACAGGATGGCGATGACGGGAGGAGGAATAGACAGACACCTGTTCTGCCTCTACATCGTGTCCAAATACCTGGGAGAGGAGTCACCGTTCCTTAAAGAGGTGCTCTCAGAAACGTGGCGTCTGTCCACCAGTCAGACTCCTCTTCAGCAGGTGGAGCTGTTTGATTTCGTTAACCACCCGGAGTACACCACCTGTGNNNNTGTTGCAGATGATGGTTATGGCGTGTCTTATATCATCATCGGAGAAAACATGATCAACCTGCACATTTCCTGCAAACACTCTTGTCCTCAGACCGTTAGTACACTAGCATGCGCTTTTTTCATTACCATTTTTCTGAAACCATATGGAATTAAAAAATTGAGACTGAATTtataaaatggctttttgtTAAGCTAGTTAGGATAAGCACAaactaaactttatttaattggaaaaaatatatatataaatgctacaTAATGAACTTTAAACTTAAGCTTAAATTACAACAAGAGCTATTTCCTTGGCAGGTAACTGATATATaacaaatgtactaaatattaaatctgAGG

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26937 lncRNA upstream 92827 8514149 ~ 8742302 (+) False G18048
TU27001 lncRNA upstream 159243 8671661 ~ 8675886 (+) True G18092
TU26949 lncRNA upstream 344712 8474293 ~ 8490417 (+) True G18055
XR_006248186.1 lncRNA upstream 520639 8312389 ~ 8314490 (+) True LOC122331402
TU26881 lncRNA upstream 617912 8215252 ~ 8217217 (+) True G18010
TU27278 lncRNA downstream 26433 8881198 ~ 8882122 (+) True G18261
TU27283 lncRNA downstream 132288 8987053 ~ 8988610 (+) False LOC122341292
TU27303 lncRNA downstream 156928 9011693 ~ 9012178 (+) False pgls
TU27339 lncRNA downstream 327775 9182540 ~ 9183276 (+) False brd4
TU27326 lncRNA downstream 329634 9184399 ~ 9185581 (+) True LOC122341719
XM_043228383.1 mRNA upstream 126847 8704444 ~ 8708282 (+) True LOC122330982
XM_043235571.1 mRNA upstream 174613 8616280 ~ 8660516 (+) True LOC122341890
XM_043225538.1 mRNA upstream 259416 8565400 ~ 8575713 (+) True ddx47
XM_043235902.1 mRNA upstream 271750 8557678 ~ 8563379 (+) True LOC122342110
XM_043235544.1 mRNA upstream 278819 8552086 ~ 8556310 (+) True LOC122341872
XM_043230932.1 mRNA downstream 121559 8976324 ~ 8979876 (+) True LOC122333359
XM_043234662.1 mRNA downstream 125826 8980591 ~ 8988810 (+) True LOC122341292
XM_043225635.1 mRNA downstream 155285 9010050 ~ 9012115 (+) True pgls
XM_043225627.1 mRNA downstream 158330 9013095 ~ 9021646 (+) True colgalt1a
XM_043234664.1 mRNA downstream 169613 9024378 ~ 9041533 (+) True LOC122341294
TU26907 other upstream 271753 8260084 ~ 8563376 (+) False LOC122342110
TU26987 other upstream 283978 8544460 ~ 8551151 (+) False LOC122331854
TU26936 other upstream 310395 8513349 ~ 8524734 (+) True G18048
TU26932 other upstream 318675 8513349 ~ 8516454 (+) False G18048
TU26858 other upstream 682304 8150770 ~ 8152825 (+) False LOC122341282
TU27323 other downstream 329763 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 329763 9184528 ~ 9185581 (+) False LOC122341719
TU27599 other downstream 839867 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 885031 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 944050 9798815 ~ 9799755 (+) True hbbe1.3

Expression Profile