RNA id: XM_043235801.1


Basic Information

Item Value
RNA id XM_043235801.1
length 3431
RNA type mRNA
GC content 0.45
exon number 13
gene id rabep2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19409591 ~ 19417891 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaaaacaaaacaataaatgtatggCTTGCAATCAAAGTGGTGCACTGTACACGAGCGAATCACTCTTTTGAATCGTTTCTTTGTGCCGAATCTGCCAAAACGGTTCACTTGATTATTTTGCTCTGATTCAAAACAATCATGTCAAATCCTCCTTCATTTACCATGACCGAAAACTTCATTAAAATTGCATGCAAATACATCGGTCCACCGGGGaaccttttttcccccctgcaTTAGGCAACGTCTTTTTTGACAGCAGTGGCATTTTTAAACGGTTTCTACAAATATTCTAGATGAAAAacatatagaaaacatttttttttctttagttcaATTAGACGACTGACCACAGGTTTTGGAAAATATTCAAAGCCATCTAAGCTACGTATTTGCATATATTCTCCAAGGCGGAGCGCGCGGGTAGCTCGCGTCCTCTCGGGGCCCGTCTCAAATCCTAGCCCGCCGGGCCTCGCTACCTAGGCAGCATCAGCTCGCGCCCGAGGCCCGAAAGCGCGGTCTGTCTAGTCAGCTCACTAGATTTTGAAACAGTCCCCGCGTGTGTGCGGCTCCAGGGAGGATGGTTAGGTAACATCCGCAGCGCTGAACCGGGAAAGTTGTTTCCTGAACTCTTGGCGCAGTTTTGTTGAAGCCCGGCCCTGCCGCACTTCACAGTCGCACAGGAAAAGAAAGACGGATGCGGGCGAAGGGAGGCACATCGAAACGAAAGGACAATATCGAGACAAATGACGCGAGACCATGGACGCGTTGGACACGACAGCATCGCGCGGGGACGAGCAGCACGACGTGGGAGCTGAGGCAGACCTGCAGACGCAGCTAATCGAGTGTCGAGCTCAACTCGAGCACTGGCAGGGCGTGGCGAGGATCTGCGAGCTTAGCAAGCAGGAGGAGCTCCAGGAGCTGCAAAAACAATGCGACCAGGAGATTCAGTCCTTGCAGGAGGCTCTGAGAGAAACCGCTGCTCAGTATGAGGTCAGAATATCTGTTCTGCAGTCAGAACGAGCACAGTGGAGGAGAGCCACTTCATCCCAGAACACTAAGGGTATCTTTAAAAAGGTGGAGGGTAGCTCTCCCCCACAGGGTGGTTCCCCTCCCCTGCGGACTGCTGAGCATGAGGGGTCAGGTTCAGACTCTGATCCACTGGAGCTGTTGGCGGAGACGTCAGATGCAGAGACAACAGGCCTTATGATGGACTACTTTCCCCAGCACTGTGACTCTGCCTCCCTGTCTTCTTTCTCTCTGGACACGCCCTCTTTGCCCCGACACCGGCCCCCTCAAGACGACACCGCCTCCCTGGTGTCCACAGGAACCCTGGTGCCTGAAGCCATCTACCTGCCACCTCCGGGCCACAGGCTGGTCACGCATGCAGACTGGGACAAACTGCAAGCACAACTTGTAGAGCTTCAAGAGGAGCTGACAGAACTTCAAAAGCAGAAAACTGAGCTGGAGAAAGAACTGGATGTGCAAAGTACAGAGACACAAAAACAGTTGTCGGTACTTCAGTGTCAGGTGCAAACCTCTGAAACCCTTCTTCAAGACCTACAGAAATCATTTAGCCAGTCACAAAATGCGGTCCAGAGCAGATTGGCGGAGCTGTCTTACTCTCAGAAGAGAGTTTGTAATGAGCTCTCCAAGTTGAAAGGTGAAGACGCTGATGTGGATGAAAATAGCCTACCACCCCACAGTCCAACACTAGAGGCAGCTCACTGTGAGGAGAGACTTCGTATTGAAATAGTCAACTTACAGGATCAGCTGGAGACACGCACGGAAGAAAGCGAAATTTTAGAAGTTAAGCTTGCCAGCCTCACAGTAGAGACAGACCGCATACAGATCCAAAAGGAAAAGCTGGAGGCTGAGCTGCAGGAGTGTCGAGTGGAAGTGCAGGGTCTGCGGGTGGCGCTTTCTCACCTTCAGAAGGACAACAGATCTCACGTCCAGGAGAAGGCGGTACTGCAGCAGCAGTGTTTAGAGTACCGCAGTCAGGTGATCAGTCTGCGCTCTCAACTAGATACTAGTCAAACCGTGCAGAAGGATTTCGTGCAGCTGTCGCAGTCACTGCAGGTGAAATTGGAGCAGATTCGCCAGGCAGAGTCTTTAAACCAAGTGAAGCACATTCTAGGGGAGGAGATTGAAGACGCTGATTTGCCTGCAGATGCCACATGAAACAACAAAAGTATAGGTGATGTTTTGGCCAACCAAAGGGAAGAGACTCTGGTGGATAAGGAGGTGGTCCTCAAAAAGGGCCAAGCTGAGGTGGGCTGCCTACACGAAAAAGAAAGCTACAGTGACATGAAGAACTAAACGGCCTTTCCTGCACTCATGAGTCCACCATTCTTCTAATGAGCTCAAACCATATGGGGAAAACACGATTCCTTATCAATTTGGACAAACTGGAATTGCTAATACTTGAATTTTGTGAAAAGCTAATACACTGACTACTAGATGACTAGACTTAATTCCACTGCAGTGTAAGTTTTATCTTCCTGGCCTTCCTAATAGATACTGTTGGATATATGTTACTCATCTTCAGCACCTGTCACcagcaaaataaaaaccaaaaacttaCTGTGGATGGATACTGGGGGCAATTGGTACTTTTAGATTATGTATTCTCTTCAGATTACTACTGATCTACCTGTTATCACATGTGCCAAAGTAACACTATCAATAATGAGAAGGACTATCATAGTATTTAACGTCATTCCACATAATATCCAATTATTTTTCGTCTTTGTATGATAATTCTTTCAGCTAACTAGTAACTGCATTATAATTGTTTGAAATGAGATGCAACCTTTTTAATACCATATTTCAATAAACAAAGTGTAATTAGCTGTTGACTAAAtgctagttttaaaaatatatatgtgttttaaaGATTACATCTTTAAATTCATACCATTTTTATGTTACAATTACCCCCAGTTTCAAAGCCATGATGAAATCTTTTGTGATATCCACCAGCAACAGTGTTAGCATATTGACTTGAAGCCAACAACCAAGAGatacaataaatattacttgaaattaaatacatttagtaatattagaaaatattgcaccgtaaaatatttttgtagctGAAATGGTTTTTGTTGAAACCATTTCAAAGTTGGAACTTCTGCTGAAAAGACAGTTGCCCCCTGCTAGAATACTACCTACCCTACTATAATTATTTGTGCATTCAATTTAAGGCCAAAGTCACTTTACTCTAAAGAGCCATCATTTCATTATGAAGCATCTGGTGCCTGAGCCAGTGAACAGTGGAAGATCAATGTATGTTAAAGAGATGATGAAACACTGTTTGAATGGggcaaataaatgttaattcatatttatgtagCACAATGTTAGTAACAAATCTGAGTGCATTACatatgtatgaaaaataaagattaaactaaaaaacaa

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K20130 RABEP2; Rab GTPase-binding effector protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31539 lncRNA upstream 104533 19304852 ~ 19305058 (+) True G21215
TU31441 lncRNA upstream 121942 19258917 ~ 19287649 (+) True G21151
TU31498 lncRNA upstream 555048 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 580338 18828686 ~ 18829253 (+) False LOC122341799
TU31489 lncRNA upstream 705908 18702584 ~ 18703683 (+) True G21180
TU31570 lncRNA downstream 20116 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 37535 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 53108 19470999 ~ 19472687 (+) True G21269
TU31590 lncRNA downstream 65610 19483501 ~ 19484384 (+) True G21246
TU31630 lncRNA downstream 71882 19489773 ~ 19490022 (+) True G21275
XM_043235803.1 mRNA upstream 907 19403562 ~ 19408684 (+) True si:ch211-11k18.4
XM_043235802.1 mRNA upstream 907 19403562 ~ 19408684 (+) False si:ch211-11k18.4
XM_043235805.1 mRNA upstream 6415 19399408 ~ 19403176 (+) True ypel3
XM_043235806.1 mRNA upstream 6415 19399408 ~ 19403176 (+) False ypel3
XM_043235804.1 mRNA upstream 10319 19394731 ~ 19399272 (+) True gdpd3a
XM_043235342.1 mRNA downstream 25329 19443220 ~ 19445897 (+) True LOC122341749
XM_043235344.1 mRNA downstream 29280 19447171 ~ 19449662 (+) True hsd17b1
XM_043235343.1 mRNA downstream 33520 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043229689.1 mRNA downstream 91197 19509088 ~ 19511507 (+) True nkiras2
XM_043233601.1 mRNA downstream 499779 19917670 ~ 19921271 (+) False aspdh
TU31603 other upstream 6415 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 6415 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 6415 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 117250 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 416394 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 646599 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 648239 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 688955 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 767676 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 769637 20187528 ~ 20188083 (+) False eftud2

Expression Profile