RNA id: XM_043235804.1


Basic Information

Item Value
RNA id XM_043235804.1
length 1584
RNA type mRNA
GC content 0.44
exon number 11
gene id gdpd3a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19394731 ~ 19399272 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGCTGAAAAGTGAAAACTCACACCTAGAGAGCAAGCTTTCATTGTTTAGGTTTTCTCTAGTGGGGAGGCATTGATGTTAGCAGGAATGAAGGAGCGAGAGGAAGCTTTACATTGTTACCTTGCTTTGCTTTCTCATGAGGCAATATTTCTTGCGAAAGTAAGTGAAGTAAAGTGAGGGAAGAAAAGGGAGTGGCTGAGAAACTAGTGAACTAGAGCGCTGAGCGACACAAGGCAAGGGAAAAGATAAGGAAAATCATACTGACATCAGCACTGGAGACAGGTGTACAGGAGCCGTACTTGGATCTGAAACTGGATCAGATACTCCAGGACCTCTCAAATAAAAGTTGAACGGACAAATAAAAGTATTGgTTGTGTTTTTGCGTTCACCTGCTGTTTATCGGAGCCCCTTTAGTGGGAATTATGGCAAGCTACCTGTACTACCTGCTCCCAGCAGTAGGGGGCTACGCTCTCACTTCACTCTACTTTCTGAAGAACCCTCATATTCTGCACAAGAAGAAGCAGACAGCTTTCTCCTGCACCCACATCTCTCACAGGGGAGGCGGTGGTGAAAGGATTGAGAACACCATAGAGGCCTTTACACATGCGGTTGAAGAAGGCACAGAGATGCTGGAGTTAGACTGTCACTTGACTAAAGACGGTCATGTTGTTGTGTCACATGATGAGAACCTCCTGCGGCAGACTGGACAAGATGTCAACGTTTCCTCCCTAAAACTGGAGgATTTGCCACCTTATAAGGAGACGCTCGAGGTGACCtttaagacagGCCACGTCAGCACTGGGTCAGATAGAAACATTGCATTATTAGAGGACGTCTTCTGCAAATTTCCACAGACAGCTGTAAACATTGAAGTGAAAGAGAATAACAGCTTGCTCATTGAAAAGATTTCTGATCTCGTGAAGAAATACAACAGAGAGGCCACCTCAGTTTGGGCTTCTGTTGACTCTACCATCATGAAAAATTGTCTCAAAACAAATTCCTCAATGCCCTACATGTTCACTGTGAAGCGAGGTTTAAAGCTGCTCCTGCTCTACTACACTGGTCTCCTGCCATTCGTTCCCCTCGGGGAGAGTTTCCTGCAGTTCTACCTGCCACAGATCATAAACAGAGAATACATACCTGACATGTGGATCATGAGAAGCAGACTGGTCATCTTTTTAATTGAAAGGCTGACGATGAGAAAAGGGATGTTCAAGCACCTCAGAGACAGAGGAATTCAGattcatcTCTTTGTGTGTAACAACGAAGAGGATATTAATACTGCATTTGCTGTAGGAGCAACAGGAGTCATGACCGATTATCCCTCCCTGTTATCAAACTATATTAAAACGCACACACAAGACACGTGATCAAACGCAAACACACAATGTAATTAACCCTTGCCCAGTCAAAcaccacgcacacacacgctgtaCAAATGCTGTTTGCCTTTAAACACAGACAAGTTTTATATCAACGACAATATTATCTTATCTAGCATAGTGTTCACACGAAACCTATGTGGTTTATGTCATTCTTTATGGGTCAGTATGAACACGCATAATAAATACAACTCATGCCTTA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0007420 brain development biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31539 lncRNA upstream 89673 19304852 ~ 19305058 (+) True G21215
TU31441 lncRNA upstream 107082 19258917 ~ 19287649 (+) True G21151
TU31498 lncRNA upstream 540188 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 565478 18828686 ~ 18829253 (+) False LOC122341799
TU31489 lncRNA upstream 691048 18702584 ~ 18703683 (+) True G21180
TU31570 lncRNA downstream 38735 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 56154 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 71727 19470999 ~ 19472687 (+) True G21269
TU31590 lncRNA downstream 84229 19483501 ~ 19484384 (+) True G21246
TU31630 lncRNA downstream 90501 19489773 ~ 19490022 (+) True G21275
XM_043233870.1 mRNA upstream 1533 19385022 ~ 19393198 (+) True mapk3
XM_043233874.1 mRNA upstream 14102 19376975 ~ 19380629 (+) True ppp4ca
XM_043235124.1 mRNA upstream 97200 19292801 ~ 19297531 (+) True c3h17orf75
XM_043235126.1 mRNA upstream 97200 19292801 ~ 19297531 (+) False c3h17orf75
XM_043235770.1 mRNA upstream 132846 19203479 ~ 19261885 (+) True xylt1
XM_043235805.1 mRNA downstream 136 19399408 ~ 19403176 (+) True ypel3
XM_043235806.1 mRNA downstream 136 19399408 ~ 19403176 (+) False ypel3
XM_043235803.1 mRNA downstream 4290 19403562 ~ 19408684 (+) True si:ch211-11k18.4
XM_043235802.1 mRNA downstream 4290 19403562 ~ 19408684 (+) False si:ch211-11k18.4
XM_043235801.1 mRNA downstream 10319 19409591 ~ 19417891 (+) True rabep2
TU31536 other upstream 102390 19291445 ~ 19292341 (+) True G21213
TU31519 other upstream 401497 18991458 ~ 18993234 (+) True G21202
TU31520 other upstream 401534 18991458 ~ 18993197 (+) False G21202
TU31517 other upstream 401572 18991458 ~ 18993159 (+) False G21202
TU31405 other upstream 521674 18869266 ~ 18873057 (+) False G21125
TU31603 other downstream 560 19399832 ~ 19403176 (+) False ypel3
TU31597 other downstream 599 19399871 ~ 19403176 (+) False ypel3
TU31600 other downstream 599 19399871 ~ 19403176 (+) False ypel3
TU32077 other downstream 665218 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 666858 20066130 ~ 20068001 (+) False LOC122341338

Expression Profile