RNA id: XM_043235808.1


Basic Information

Item Value
RNA id XM_043235808.1
length 5229
RNA type mRNA
GC content 0.54
exon number 34
gene id LOC122342014
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24994255 ~ 25009566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTCAGGGGGCGCTCGCGAGCCGCTCGGGCCGCTCTAGAGATACAATCAGACCAGACGGGAGGGGGAAGCGAGAGGGAAAAGGAACTAGTCGAGCTGCCCTTTGTTTCTAGATTTGCCGAAGAgtacggggaagagaccggcgCGAATCTATACTGCTTTCTGAAAACACCTGCAGAACCTCTCACTGCCTCTCACTTCTTCCGGCTCTGCTGAGAGATGTCCACCCCTGACCCACCCATGGGCGGGACCCCTCGGCCGGGCCCTTCCCCAGGCCCTGGGCCGTCTCCAGGGGCCATGTTAGGGCCTAGTCCTGGACCCTCGCCTGGCTCTGCTCATGGCATGATGGGCCCCAGCCCTGGGCCCCCCTCCTCAGGACACCCACTACCTCCACAGGGCCCCTCAGGTTACCCCCAGGACAACATGCACCAGATGCACAAGCCCATGGAAGGCATGCATGAAAAAGGCATTCCTGAAGATCAGCGCTACGGTCAAATGAAGGGTATGGGCATGAGGCAGGGTGGCCACAGCGGCATGGGACCTCCGCCCAGTCCTATGGACCAACACTCTCAAGgttacCCCTCTCCTCTAGGTGGTTCTGAACATGCCCCCAGTCCGGTACCTGCTAACGGCCCTCCGTCTGGCCCCATGATGCCCTCCGGTCCTGGTGCCATGGAGGGTGGTGATCCGCAGGCCATGGGTCAGCAGAATCGGAGCGGAGGTGCCGGTGGTGTTGCAGGTGCAGGACCCAGCGGAGGACCTCCAAACCCAGGAGGACCTGGTGGTGCTGGTGGGCCTACTCCTTTTAACCAAAACCAGCTTCACCAACTGCGGGCACAGATCATGGCCTATAAGATGCTAGCACGCGGGCAAGCTCTACCTGACCATCTCCAGATGGCGGTGCAGGGAAAACGGCCCATGCCAGGCATGCAGCCAGGGATGCCCAACATACCCCCTGCCTCAGGACAAGGAGCAGGAGGCCCCGGACCCGCGGGACCCAACTACAATAGACCACAAGGAATGGTCGGACCAAACATGCCTCCTCCAGGACCTTCTGGTGTTCCTCCAGGCCTTCAGGGACAACCCACCAATGGACCACCTAAATCCTGGCCTGAAGGGCCTATGGTGAATGCTGCCGCCCCTGCGAGTGCCCCACAGAAGCTGATACCTCCTCAGCCCACAGGTCGCCCGTCTCCAGCACCACCTTCAGTTCCTCCGGCCGCTTCACCCGTCATGCCCCCTCAGACCCAGTCTCCAGGACAACCAGCCCAGCCACCCATGGTGCTTCATCAGAAACAGAACCGCATCACACCCATCCAGAAACCCCGGGGCCTGGACCCAGTGGAGATCCTCCAGGAGAGAGAGTACAGGTTACAGGCTCGTATTGCTCATCGTATTCAGGAGCTGGAGAACCTTCCAGGATCTCTGGCTGGAGACTTGAGGACCAAAGCCAACATTGAGCTCAAGGCACTTAGGCTCCTGAACTTCCAGAGACAGCTCCGTCAGGAGGTTGTAGTTTGCATGAGACGTGATACGGCCCTGGAGACTGCGCTGAACGGCAAGGCCTACAAGCGCAGCAAGAGACAGTCCCTGCGAGAAGCTCGTATCacagagaaactggagaaacAGCAGAAGATCGAGCAGGAACGCAAACGCCGTCAGAAACATCAGGAGTATCTCAACAGCATCCTGCAGCATGCAAAAGACTTCAAGGAATATCATCGCTCCATCACCGCAAAGATTCAGAAGTTGACCAAAGCCGTAGCCACATACCACGCCAACACCgagagagagcagaagaagGAGAATGAGCGTATCGAGAAGGAGAGAATGAGAAGGCTGATGGCTGAAGATGAAGAGGGATACAGGAAGCTGATCGATCAGAAGAAAGACAAGCGTCTGGCTTACTTGCTGCAGCAGACGGACGAGTATGTGGCCAACCTCACAGAGCTTGTCAGAGCTCACAAAGCAGTCCAGGCCCTGAaagacaagaagaagaagaagaaaaagaagAAGCCAGAGAATGCTGAGGGTGGAGCTCCTGCTTTGGGTCCAGATGGAGAGCCTCTGGATGAGACCAGTCAAATGAGTGACCTACCGGTGAAGGTGATTCACGTGGACAGTGGGAAGATCCTCACCGGCATGGACGCTCCTAAAGCTGGACAACTGGAAGCCTGGCTGGAGATGAATCCTGGATACGAGGTGGCCCCGCGGTCTGATAGTGAAGATAGCGgctctgaggaggaggaggaggaggaggaggagcctCAGCCATCTCAGGCCCCAACAGAGGAGAAGAAGATTATTACGGATCCAGACAGTGAGGATGTTTCTGAGGTGGACGCCCGTCACATCATtgaACATGCCAAGCAGGATGTTGACGATGAATACGGTAATGCAGCGTTCGTTAGAGGTCTGCAGTCGTACTACGCCGTGGCTCACCAAGTCACAGAGAAGGTGGACAGGCAGTCAAGCTTGTTAATAAACGGACAGCTCAAACAGTACCAGATCAAAGGTCTGGAGTGGCTGGTGTCTctgtataataataacttaaatggCATTCTGGCTGATGAAATGGGTTTGGGAAAAACCATCCAGACCATTGCACTCATCACCTACCTCATGGAGTACAAACGCCTCAACGGACCCTTCCTAATCATCGTCCCCCTTTCGACTCTGTCGAACTGGGTGTACGAGTTTGATAAGTGGGCTCCGTCTGTGGTGAAAGTTTCTTATAAGGGCTCTCCTGCTGCTCGTCGTGCTTTTGTTCCAATATTGCGCAGCGGCAAGTTCAACGTGCTGGTCACCACTTATGAGTACATCATCAAAGACAAGCAAGTGCTGGCCAAGctccgTTGGAAGTACATGATAGTGGACGAAGGCCACCGTATGAAGAATCACCACTGCAAACTGACTCAGGTGTTGAACACGCACTACCTGGCGCCCCGGCGTCTGCTGCTCACCGGCACACCGCTGCAAAACAAGCTCCCCGAACTGTGGGCGCTGCTCAACTTCCTGTTGCCCACCATCTTCAAGAGTTGCAGCACCTTCGAGCAGTGGTTCAACGCTCCGTTTGCCATGACCGGAGAGAAGGTGGACCTGAACGAAGAAGAGACCATTCTGATCATCCGTCGTCTGCACAAAGTGCTCCGCCCCTTCCTGCTCAGGAGACTCAAGAAAGAAGTGGAGGCCCAACTGCCCGAAAAGGTGGAGTACGTGATCAAGTGCGACATGTCGGCTCTTCAGAGAGTGCTTTACAGACACATGCAGGCTAAAGGAGTTTTGCTCACCGATGGCTCTGAGAAAGACAAGAAGGGTAAAGGCGGCACTAAGACTCTGATGAACACTATTATGCAGCTGAGGAAGATTTGCAACCACCCTTACATGTTCCAGCACATTGAGGAATCTTTCTCTGAGCATTTGGGTTTCACTGGAGGCATCGTTCAGGGACCTGATTTGTACCGTGCCTCCGGTAAGTTTGAGCTGCTGGACCGTATCCTGCCGAAGCTCCGCGCCACCAACCACAAAGTGCTGCTCTTCTGTCAGATGACCTCGCTCATGACCATCATGGAGGATTACTTTGCCTACCGCAACTTCAAATACCTGCGCTTGGACGGAACCACCAAGGCTGAGGATCGTGGCATGTTGCTGAAGAACTTTAATGATCCATCCTTTCAGTACTTTATCTTCTTGCTGAGTACCAGAGCAGGAGGTCTGGGGCTGAACCTGCAGTCCGCTGACACTGTTATCATCTTTGACAGCGACTGGAACCCTCACCAGGATCTGCAGGCCCAGGATCGCGCCCATCGTATCGGGCAGCAGAACGAGGTGCGTGTGCTGCGTCTGTGCACCGTGAACAGCGTGGAGGAGAAGATCCTGGCCGCTGCCAAATACAAACTGAACGTGGACCAGAAGGTCATCCAGGCCGGTATGTTCGACCAGAAGTCGTCCAGCCACGAGCGCAGAGCTTTCCTGCAGGCCATCCTGGAGCACGAAGAGCAGGATGAGGAGGAAGATGAAGTGCCAGACGACGAGACTGTTAATCAGATGATCGCTAGAAGCGAGGAAGAGTTCGATCACTTCATGCGCATGGATCTCGACCGCCGTCGGGAAGAGGCTCGCAACCCGAAACGCAAACCCCGGCTGATGGAGGAGGATGAGCTGCCCACCTGGATCATGAAGGACGACGCAGAAGTGGAGAGGCTCACCTgcgaagaagaggaggagaagatgTTCGGCCGCGGCTCCCGTCAAAGAAAAGAAGTGGACTACAGCGACTCCCTCACAGAGAAACAATGGCTGAAGGCCATTGAGGAAGGCACTCTGGATGAGATTGAAGAAGAGGTGCGCTACAAGAAAACAACCCGGAAGAGGAAGCGCGACCGCGACCTTGACCTTCCAGGCCCAGCCACACCCAGCTCCAGCGGGAGGAGCAGAGATAAAGATGACGATAGTAAGAAGCAAAAGAAACGAGGCCGTCCTCCTGCCGAAAAACTCTCGCCTAACCCTCCCACGCTCAccaagaagatgaagaagattGTGGATGCCGTGATCAAATACAAGGATGGaAATGGTAGACAACTGAGTGAGGTGTTTATTCAACTGCCGTCACGTAAAGAGCTGCCAGAATATTACGAACTCATTCGCAAACCTGTGGACTTTAGGAAGATCAAggaACGCATTAGGAGTCATAAGTACCGTACTCTGAATGACCTGGAGAAAGATGTCATGCTTCTCTGTCAGAACGCGCAGACCTTTAACCTGGAGGGATCACTGaTCTACGAAGACTCTATCGTGCTGCAGTCTGTGTTCACCAGCGTGCGGCAGAAGAtcgagaaagaggaagagagcgagggagaagagagcgaggaggaagaggacgagGTAGATGAAGGATCAGAGTCTGAATCTCGTTCAGTGAAGGTGAAGATAAAGCTGAGCAGAAAGGAGAAGGTGGAGAGAGGGAAGGGAAGACGCCGTACCGGACGCAGTTGGCGCCCTAAACCTGTCGTTAGCGATGACGAAAGCGAGGAGGACCAGGAAGAGGAGCGTTCTGCTAGTGGCAGCGAGGAAGATTAAAGCTTCTTCTGGACCAATCACTTCTGCTGCAGATATGTCATTTTTACACGAGATCCGACAGACGCCCGCTCCTAAAGGGCCTAGTTTTATCCTAGAACAGCACATTTTTAGAGAGAGGACACGTacatgaaaatgattaaatgaaaagat

Function

GO: NA

KEGG:

id description
K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34188 lncRNA upstream 184292 24721526 ~ 24809963 (+) False G23026
TU34184 lncRNA upstream 184292 24754538 ~ 24809963 (+) True G23026
TU34167 lncRNA upstream 320543 24634157 ~ 24673712 (+) False G23014
TU34230 lncRNA downstream 70126 25079692 ~ 25087970 (+) True G23044
TU34290 lncRNA downstream 358711 25368277 ~ 25374497 (+) False arhgap17b
TU34295 lncRNA downstream 369662 25379228 ~ 25382913 (+) True G23077
TU34296 lncRNA downstream 382952 25392518 ~ 25394254 (+) True G23078
TU34258 lncRNA downstream 402352 25411918 ~ 25447270 (+) False G23061
XM_043235812.1 mRNA upstream 1037 24983281 ~ 24993218 (+) True LOC122342019
XM_043234713.1 mRNA upstream 139018 24852381 ~ 24855237 (+) True LOC122341374
XM_043235818.1 mRNA upstream 160299 24831425 ~ 24833956 (+) True LOC122342024
XM_043235820.1 mRNA upstream 165816 24815873 ~ 24828439 (+) True LOC122342030
XM_043235813.1 mRNA upstream 212645 24771291 ~ 24781610 (+) True il12rb2l
XM_043235810.1 mRNA downstream 96615 25106181 ~ 25162861 (+) True grin2ca
XM_043235819.1 mRNA downstream 268226 25277792 ~ 25286925 (+) True gaa
XM_043235176.1 mRNA downstream 278188 25287754 ~ 25308434 (+) False tbc1d16
XM_043235178.1 mRNA downstream 278188 25287754 ~ 25306486 (+) False tbc1d16
XM_043235177.1 mRNA downstream 278191 25287757 ~ 25308434 (+) True tbc1d16
TU34203 other upstream 8338 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 182678 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 184292 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 463692 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 544966 24446878 ~ 24449289 (+) True G22953
TU34266 other downstream 402352 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 435733 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 566410 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 603670 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 603708 25613274 ~ 25615293 (+) False LOC122336634

Expression Profile