RNA id: XM_043235820.1


Basic Information

Item Value
RNA id XM_043235820.1
length 2065
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC122342030
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24815873 ~ 24828439 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAAACCATGCAGCGGTCAGAGGGCGGCTCAGAGTCGGCGTCCACTGTGGCGCTGAGAACCTCCACTTCGGCCCAGGCGCCGGTGGTTCAGCCCGTTCCCGCCTCGCAACAGgtcCAGCAGGTTCAGCATGTGTACCAGTCCCAGGTGCAGTATGTGGAGGGAGCAGAAGCAGTCTACCCCAATGGCACAATtcgaACTGCATACTCGTACAACCCAGAGTCCCAGCTGTACGGACAGGGCAGCGGAAGCACCTATTTTGACACTCAAGCAGGTGGTACTCAGGTTACCACCGTCGTCTCCTCTGCTGGCGGAGTGCCTGCCCACAGCATGGTGGGAATTGCCATGGACGTGGGCAGCAGTCAGATCATTTCCAGCGGCAGCGCCTACTTGATCCACGGAGGGATGGAGAGCGGCCGCCACCATACCTCTCACTCCTCGCGCTCCTCATCCGCAATGCTTGAAGTGGCGATTGAAAACCTCCAAAAGTCAGAAGGGATTGCCACTCACAAAAGCAGCCTGCTCAACAGCCATttgCAGTGGCTGTTGGACAATTATGAAACGGCTGAGGGTGTGAGTTTGCCGCGGAGCTCTCTTTATAACCACTATCTCAGACACTGTCAGGAGCAAAAACTGGATCCGGTTAATGCAGCCTCCTTTGGCAAACTCATCCGATCTGTCTTCATGGGCCTTCGCACACGCCGACTTGGCACAAGgggGAACTCAAAATACCATTATTACGGTATTCGTCTCAAGCCTGACTCGCCTCTCAACCGCTTGCAGGAGGACACACAGTACATGGCAATGAGACAACAACCTGTCCATCAGAAACAGAGGTGGAAGCCGGTACAGAAGGTGGAGGGAATCACTAACGGAATGTCGTCAGGATCCgggcagcaacagcagcagcagcagagctcGGGTCTGTCGGATATCAGCACCCAGGTCCAGCAGTACCAGCAGTTTCTAGATGCGTCCCGGGCTCTCCCAGAATTCCCCGATGTTGACCTGCAGGGTAGAGCTTTACCAGAGGGCATTGAGCTGGAACATCTTAAAAGCTTTCAGTTGCTCTACAGAGAACACTGCGAAGCCATTCTGGACGTGATGGTCAACCTTCAGTTCCCTTTGGTGGAGACTCTTTGGAAAACGTTTTGGAGGTTCAGTGAAAGTCAGGCAGGGGACTCGGCAACTCTAGCTGTGCATGACGAGTCTGAGAAGAGACTGCCCAAGTCATGTTTGGTGCTTCTCTGTAAATATGATCCAGTGCTCCGCTGGAGTCGTGACTGCGACAACACGTTGTACCAGGGCCTGGTGGAGATGCTCATCCCAGACGTTCTGAGACCTATTCCCAgtgccttaACACAAGCCATCCGAAACTTTGCGAAAAGTCTTGAGAGCTGGCTGACCAACGCCATGATGAACATTCCTGAAGAGATGGTTCGTGTGAAGGTGACGTCTGCAAGTGCCTTCGCTCAGACCCTGCGCAGGTACACCTCTCTAAACCACCTGGCCCAAGCAGCTCGTGCCGTACTGCAAAACACGGCACAGATCAACCAGATGCTCAGCGACCTCAACAGAGTGGATTTTGCCAATGTGCAGGAACAGGCCTCCTGGGTGTGCCGCTGCGAGGATCGGGTGGTGCAGCGGCTGGAGCAGGACTTCAAACTGACCCTGCAGCAGCAGAACTCTCTGGAGCAGTGGGCGGCCTGGCTGGATGGGGTGGTCTCGCAGGTCTTAAAGCCCTACCAGTCTAGCTCTGCCTTTCCAAAAGCAGCTAAACTCTTCCTGCTGAAATGGAGCTTTTACAGCTCTATGGTGATCAGAGACCTGACTCTTCGCAGTGCCGCAAGCTTCGGCTCGTTTcacctcatccgcctgctgtaTGATGAGTACATGTACTACCTGATAGAGCACAGAGTCGCCCAGGCCAAGGGTGAAACTCCCATCGCTGTCATGGGAGAGGTACAAGCACACTCACTGAAATCTTTACCTAACCTCAGACACACTTCTCACTTCGGTGTGTAAGACCAAACAAACGTGCGTCACCCCTCTCATAACAGGATATT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09173 RFX1_2_3; regulatory factor X 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34188 lncRNA upstream 5910 24721526 ~ 24809963 (+) False G23026
TU34184 lncRNA upstream 5910 24754538 ~ 24809963 (+) True G23026
TU34167 lncRNA upstream 142161 24634157 ~ 24673712 (+) False G23014
TU34160 lncRNA upstream 165169 24640580 ~ 24650704 (+) True G23013
TU34161 lncRNA upstream 165169 24640580 ~ 24650704 (+) False G23013
TU34210 lncRNA downstream 128872 24957311 ~ 25267157 (+) True G23031
TU34230 lncRNA downstream 251253 25079692 ~ 25087970 (+) True G23044
TU34290 lncRNA downstream 539838 25368277 ~ 25374497 (+) False arhgap17b
TU34295 lncRNA downstream 550789 25379228 ~ 25382913 (+) True G23077
TU34296 lncRNA downstream 564079 25392518 ~ 25394254 (+) True G23078
XM_043235813.1 mRNA upstream 34263 24771291 ~ 24781610 (+) True il12rb2l
XM_043235817.1 mRNA upstream 46602 24767629 ~ 24769271 (+) True LOC122342023
XM_043235192.1 mRNA upstream 197632 24614599 ~ 24618241 (+) True s1pr5a
XM_043229063.1 mRNA upstream 253284 24558746 ~ 24562589 (+) True si:dkeyp-69e1.8
XM_043235410.1 mRNA upstream 258761 24550762 ~ 24557112 (+) False hmgxb4a
XM_043235818.1 mRNA downstream 2986 24831425 ~ 24833956 (+) True LOC122342024
XM_043234713.1 mRNA downstream 23942 24852381 ~ 24855237 (+) True LOC122341374
XM_043235812.1 mRNA downstream 154842 24983281 ~ 24993218 (+) True LOC122342019
XM_043235808.1 mRNA downstream 165816 24994255 ~ 25009566 (+) True LOC122342014
XM_043235809.1 mRNA downstream 165816 24994255 ~ 25009566 (+) False LOC122342014
TU34186 other upstream 4296 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 5910 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 285310 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 366584 24446878 ~ 24449289 (+) True G22953
TU34141 other upstream 376410 24434055 ~ 24439463 (+) True G22996
TU34203 other downstream 154910 24983349 ~ 24985917 (+) False LOC122342019
TU34266 other downstream 583479 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 616860 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 747537 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 784797 25613236 ~ 25615293 (+) False LOC122336634

Expression Profile