RNA id: XM_043235826.1


Basic Information

Item Value
RNA id XM_043235826.1
length 4685
RNA type mRNA
GC content 0.40
exon number 2
gene id chst12a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16222200 ~ 16229178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAATACGCCTTTTAGCAGGCTCATTGGAAGTCCGGTAGAGCATGTGCTCTATAAGTGTTTCTAAAAACAAAGTGCGGGTCTGTGCTGCCTAAAAGTCCTCATCACCGTACGGTTCAGCAGCGGAGCGGAGTCTTGCGCACACTTGGAAATCTCGCGACATCTGCGCGCGCGGAGCACTAAAGCGCTGCTGTGTCAACACCCCGCGCGCACATCCCTCCCCAGCTGACGCCGTCTGCCTGCCGAGAAATTCGCTCTCCTGCGATGAGACTGTGATGAATGCAGTCTGGGCTGTCGGTTGTGTAATGGAGTTGAGGTGAGAATGGCACTTTCTCAGTCAAAATCAACCAAAATGGGAAAGTCGAGACTGTTCCGCATTTTTATGATTGTGGGCGCCGTCTTCATGATACTTCTTATAATCATATACTGGGATGATGTGGGGGCCTCAAATTTTTACCTGCACACAACCATCTCCGGGCCCCATCCGTCGCACCTCTCTCCGCAGAGCCGTCGTGACCCAGAAAAGAAAATAGAGGAAGACAAAGAGGGCTCGTTTTTGACGGACATTGATGCTTTTGTCAACCAGTTTTTAGAAGGAACGGCAGACCCCACGGAACAGGTGAGAGGAGAACCGCCGCCTGGAGACCCTCACAATCAGTCCTCGGAGAAATCGGAGGAGAAATTCGTCCCGAGACGAGAGTGGAAGATCCATCTGACGTCAATAGACCCCGAGAAAAAACAAAGGCAGGAGAGTAGAAAGCAGCTGATCCAAGATGTGTGCAGTAACAAAAGTTACTTCGACTTCCCCGGAAAGAACAGGACTTTTGACGACATACCCAATAAAGAGTTGGATCACCTCATTGTGGACGACAGGCATGGGATTATTTACTGCTACGTTCCCAAAGTGGCCTGCACAAACTGGAAGCGCATCATGATCGTGCTGAGCGAGAGCCTGTTGTTGGACGGTGTGCCCTACCAAGACCCTCTAGATGTTCCTCAGGAGCTCATCCATAACAGTAGCCTGCACTTCACCTTCAACAAGTTCTGGAAGCGCTATGGAAAGTTCTCTCGGCACCTCATGAAAATCAAGCTTAAGAAATACACCAAGTTTTTATTCGTCAGGGATCCTTTCGTGCGACTGATCTCTGCCTATCGCAACAAATTCGAGCAAGAGAATGAGGACTTCTACAAAAGATTCGCGGTCATCATGTTGAGAAAATACGGCAATTACACGGATCCACCGGCATCGGTCGTGGACGCTTTCGCTGCTGGGATTCGACCGTCTTTCTCGAATTTCGTTCAGTATTTATTGGATCCTAGCACTGAGAAAGAGATGCCTTTCAACGAGCACTGGAGACAGATGTACCGTCTGTGCCATCCCTGCCAGATAAATTATGATTTCGTGGGCAAGCTGGAGACCTTGGATGAGGACGCTGAGCAGTTGTTGCGGATTCTCCGCGTAGACAATGTCGTCGAGTTCCCGCAAAGTCATCGCAACCGAACAGTCAGCAGTTGGGAGCAGGACTGGTTCTCCAACATACCGCTGGAGTCCAGAAAAGAGCTGTACAGGCTGTATGAAGCCGACTTTAAACTGTTCGGGTATTCCAAACCAGAGAAGCTGTTACACGAGTGATATGCTGATCGCCAACTTTACTGAGGTGCTGACGAGATTCTGACAGCACAAAAAACAGGGCAATAGCAGTTCCTGCTGCTTGGTTCTTAATGTGCGGCTCTTTCACATGATGCTGTTTATGAAGGCCCTTTCACATGACCAGTGTCCAGAGGATCACCGTTTGGCTAATTGGTCCAGTAGGTAGATATCTTAATTGAATCAGGTGCTTCTGAAAAGCATCTTTCTCCGatgacagataaaaaaatatggcGCCCCCCACAcatcaattgaaaaaaaaaaatagcatttgtcTCCAAAACTTGATGTCTCCAGAACTGATTTTTGTGATGTTGTGCTAAATTGTTCTCTTGTTCGTTTGTGGCCATGATTGAACTAAATTAGAAAGAGGGAATAAAATGATAAGCCACGACTGAACTAAAACAAGTGAACGAATTAATACATGGCCATGATTTAGtgaataatttaatgcaaagtggccaaaaataaaataagtgagtGAATTAGTACACCATggttgtaatttaaataaaattagtggACAAATTAGTACAAAATGGCCACAAATCTTTACTTTGTGGTCATGAtatctattttttctttcacatcGCATACATACAAAAGTATTTGtgatttacaaatattataatggATGTGTTGGCagtgcctgttttttttctatcttctGAATTAAAAGTTTGAGGGCTCTTAAAACATAATATGGACaggttatttaaattttttttcctggGCTGCTAACTTATATAAGGAGATCATGATAGTCTCTAGAGAAGGGTTTGATGCACTTAGCCAATCAGGAAAGAGCATGAAATGCATTGCTGACTGTGTCACTTTGAATAGATCAGTGATAATTGGTGCAGCAAACTCAATTATGGTGTGATGTTAACATTAACTCTAAAGGTAAAGGTAACGTTGAGTCATCTGAGTCATGTGAAAGAGCCTTAAGGCCTTTTTGGAGCTTGTGGGCATTGAAAGTAATACTGTAGTGAATATACATTCCTTGCACACAGGTTACATTTCCTCAGTCCATTTCCCAGTGTCCCattaaatgtgttactgttatttgtATGGACCTCATGGACAATTTCAGAGACATTTTGATGTTTAACTACTCAAAGAAGCCtgcacaattttctttttttgatatCCTCAACAGTGTTTTAAGAACAAACTCATCACCTCATTAGTATTATTCTTATAAGGTGGATGGATGTGATAATCCCAGTAATTTTAAGTTGTATAGTTGTATGTTTTACCTAAAGAACCACCAAACTAAAATATcacaagacatttaaaaaaaaaagtattgtacaTTTAGCAAGTGCACATATTAGagtattttagaatatttttgtaaactttTACAGTTAAATGTGAAAAGTGAAGGCACTTTTGTCCTTGGAAAAAAGCgacataatattttgaaatgcaagcaaacgttttacagttttgttttgtttttatcacaaAGGGATCACTGCTCTTACAGcagtttcatttcttttcttgaaaatggcgcattttttaaacacagaaacctcaatttttatgtttccatggtttttttttttttcagtcttttaaaGTAGTTCATGGTCCTTTATTGCACAAAATTGCCAGTGTTCTGCAGTGAAGCAAGCAAATGGAGTAAATGACATCAAAAagatatttctttctttgtaaTAGAGGCTGAAGTATTCCTATTATGGCCTGTTCTTGTCAAGCAAATCTTGCCTTTCATCATTTTGGTCCTTTTATTCTTTTAGTGTGTAGCAGGGACTGGATGAGCCCTCTGATCTGCAGCATGCTATAGATGTTAGCATGTGTGCCTTGCAGTCCTTCATAAATATGCATCACTCATGAATATTGTAGCAAACTTAgcgtttttttttgctctgttaGGTGTAGAGGGTAAAACAATGGCCTTGTTTGGATATTGTTAGGAATATAATCGCAGGCACAGGGTATTTATTTCTTACTTAGCGAGTTATTTAGCAAGAGTTATTTGGTGTAATTGCTTTAGACCGTTGAAGCACAAATGTCAGTATTGTTTATAGTTCCTCATCTAGTCAAGAGTCAAACGTGGGCATgtgcaaaagaaatatataaggGTTTATTagggttatttttaaaaaaaagtattttctttacCAAGAAagtgtttccttttttaatttccatCGTGTTTTTGTGCCGCATTTTGCACATTTGATCACATGTATAAAATCGATCTCTAAGGCAGTGAGAGGTAAAAGGATGGAAGAAAGCGTGTTTGGTCGTATATTGTAGTAGGGAATGATACTGTGGAGCACAAGTGTAGCATGATCGTTGTGGAAGTGACGGGCCAGAAGGAACAGGACGTCCCGGTTCAGGGGAAGCCACAATTCTGAAATACCGCACTGTTGGGCTCATTAGGTAGCTGTGCCTTTGGagaaaagtttacatttaaaaaaaaaaagtatttttgtaagcGAGTCTCTGACTTGCAGTTAAAACAATCAAAGCTCCtactttcaaaaaaagtgttaaagtgtAGTTGCGCTTATATATATTGCATCAGATTTGTAGCCACGATTTTTGGCTGTGCTGTTGAGGCTTGTTAGATCAGTTTCAACTTTTCCTATTTCATAAACCATAAGTTCTGTTATGTGTGCAGTTGCCTATGCTGTTGATGAGGACCCGTTTTGTATACATTTGGTGCCACGCTGTACAAAGAAAGGTTTGTTTAGTGATTGTTTTGATGCCAATATGAggaaaatttgtattttttttttttttacctggcaTACTTTTCAGTCATAGGAATTTCTTAGTTGCATGAAATATGTTCAAGAGATTATGCTGAGAACAAAAGGGAAACATATGTTACATTAAATCAGGTCTTAGCAAGTGTGTTCTTCATATTtggtttgctttgcttttttccctTTGGGCAATGTACATAGctcttcttttatttattatggtattatttaatgcttcaatttcaaaagaaaaaagttcaaTAAAGTTCAATGCATGGTGCAAACACTGTAA

Function

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K04742 CHST12; chondroitin 4-sulfotransferase 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248599.1 lncRNA upstream 341531 15879468 ~ 15880669 (+) True LOC122333245
TU30493 lncRNA upstream 342871 15879130 ~ 15879329 (+) True G20469
TU30492 lncRNA upstream 343774 15878189 ~ 15878426 (+) True G20468
TU30490 lncRNA upstream 346241 15874822 ~ 15875959 (+) False G20466
TU30489 lncRNA upstream 346889 15874033 ~ 15875311 (+) True G20466
TU30699 lncRNA downstream 63427 16292605 ~ 16292806 (+) True G20647
TU30709 lncRNA downstream 78620 16307798 ~ 16308018 (+) True G20656
XR_006250530.1 lncRNA downstream 367114 16596292 ~ 16597215 (+) True LOC122342129
TU30836 lncRNA downstream 554056 16783234 ~ 16783841 (+) False micall2a
TU30837 lncRNA downstream 555099 16784277 ~ 16784497 (+) False micall2a
XM_043235238.1 mRNA upstream 985 16212367 ~ 16221215 (+) True eif3ba
XM_043234675.1 mRNA upstream 14354 16179620 ~ 16207846 (+) True gna12a
XM_043235413.1 mRNA upstream 47110 16150853 ~ 16175090 (+) True card11
XM_043230767.1 mRNA upstream 375234 15835083 ~ 15846966 (+) False mmd2a
XM_043235266.1 mRNA downstream 64044 16293222 ~ 16301224 (+) True lfng
XM_043235305.1 mRNA downstream 130734 16359912 ~ 16369501 (+) True snx8a
XM_043235306.1 mRNA downstream 143591 16372769 ~ 16375491 (+) True mrm2
XM_043235845.1 mRNA downstream 232140 16461318 ~ 16462690 (+) True LOC122342073
XM_043235699.1 mRNA downstream 244644 16473822 ~ 16475189 (+) True LOC122341966
TU30661 other upstream 17032 16179910 ~ 16205168 (+) False gna12a
TU30209 other upstream 1037327 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 1052942 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 1551520 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 1555671 14666446 ~ 14666529 (+) True LOC122342192
TU30773 other downstream 461525 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 461525 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 468821 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 776736 17005914 ~ 17005985 (+) True trnat-cgu_1
XR_006250523.1 other downstream 883974 17113152 ~ 17117041 (+) False nsmce1

Expression Profile