RNA id: XM_043235831.1


Basic Information

Item Value
RNA id XM_043235831.1
length 3306
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC122342045
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24051922 ~ 24056391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTCTCTCTCGCCCTAAAATACATGTAACCTCAAGAGGCCATGACTTCCTGCAGAACTGTAAACAGACACAGCGTTCGTGGCCCGTTTGAATGTGTCAAATTAGTATTTGTGAATTGACCTCGATCTCTGTAAAGCTCCCTGCAGgctgcacattttaaaatgtcgtGTTTACACTACTTCATTTCACTTTCATGACAATGGTGCGTCTGTGCGTTACGTGGACATGTGATTTAACACTCTGGAAGCGCTTAGACTTTCACTTGACACTTGCCATCGTCTAACacgagagaaaataaaatgcgtTGAAGACAACAGCTGCATTCGAGGTCACATAATCTCTGTTATCGAATAATTAATGGCGTCACGACTGTTAAAAAGCATGTTCTATACAGTACAAAAGTCTTAGACGTGCTGCAGTCGCCATTTTGACACCATTAGCTGTGTCCCGTAGCTTCATGGGATATCAAACTGTCCATCTTAAGTTTCCTTAAGAATCATCATCTGGGTGCCTACTGTTTTACAAATACTTCGGACATGCTACTCTGTTCACACACTGTTTTTGGCTACTAAGGAAGTACGCAATGCCGCATGCAGCATCTATTGTAAGCACTTAGATCAGAATAGCATGGCACCCTAGTTTTTCTGCAGCATGTACTATGTATACAATATGTGCGATGTGCAAGTATGAAAACCTGTTACATTTGCCGTATGTGTCGTAATAGAGCACTTTGTGACGCTACAGTTCACGGTGACTTTTATCTACTCGAGCTAACGATCATTTTCTCCTTGACTCGTTTTCATTGGCCGGACAGTCGACAGCTGCAGAGCAATACCGCTCCAACTCGCTGCACTAAAGGTGCGGCGTGAAGCGCTCACGTGACTCGCGCTCTCCCGCTGTAAGTCGATCTTCTCGCCAACAGGGGGCGCGGTTAACCAGCGCGTGCTCGGTGCGCTGAGGCCGGCCATTGGCTGTTCGTCAAAGGGAAAGAAAACTTGTTACACTTTACCTGGATACGGCGCGGACGCGAAAGTCCGAAGAAAACATTAATCGACAACATCGTTTCAAGCAAACCATGAGTTCACGGACAGGCCGCGATAGATCTCAGaGCGCTAACTGAAGTCAACAAGCATGATGAAGAAGGGAGCAATGCAGAAGAGCAAGCAATGGAATGTAAAGGGAGCCTTGCGGCTAGCCGGCGTCTTCCACTTCCTCCATTCCTGCGCCGGATGCCTCCTTCCCTTCCTGACCCTCTACTTCCGGCACCTAGGTCTCAGCGCCGCCATGATCGGCATCATCATGGCGTCCAAGCACCTGCTCGCTCTGCTGTGGCGCCCGCTTTCCAGCGTCCTCTCGCGGCAGTACGACAAGCGGCGGGCGGTTATAGTGTGCTCTCTGCTCAGCTCGGCCCTGCTGGTTTTGACTCTTCTGCTCTTCCCGTCCGCAGGAATCCAAGCTGAAAGCGGACGGTGTAACGCTAGTGAACCCGATGCCAACCCCACCCCTGTTCTCGAGAGGACGACCGTCCCATCGCAATCAAACGCTACCGTTTACTCAATAAACCAAACGTCTGTAAGCACCAAACAACCTGTCGAAGTAAGCTCCAACTGGACAGCAAGAGGCCTGCGATCCTTAAAGACGCCTGACCAGGAAGAAGATCCTCACACCGAGTTCCTGGGGAGCCTAAAAGTCATGGACGTCCAGCATCAGATGTTCTTTCTGGTTCTCATCGTAATGGGTTTGTGGGAGTTCACGGCCGCCCCGTTAGAGTGGACGGTGGATGATGGACTCTACGAATACTTGGATTTCGTAGACGCCACCGACCGTCATAACAGGGTTAAGGTCTGGAAGCAGCTTGGAGCCGCTTTTGGCACCTGTGCTGTCGGGGTTCTTGTAACCAGTCTGTTTTGTCTTACAGGAACTACTCTGGAGTTTTACTCCTACTCTGTATTTACGATCCTAACCGTCCCTGCAGCCACCCTGCTGCCTCTCTACCTCCGCAAGCGTGAGCGGCCCACTAGTGGAGGCCTTAAGGCACTACAGTTGGTGCATGGGAACTCTCAGGCGATTCTTTGTGCCGTCACTGTGGTTTTGATGGGCATGGTGAGCTCAGCTGTGTCAGATTTCCTCTTATGGCACATGCAGGACTGCGGGGCCACCGAAATCCACATGGGCGTCTCTTTAGGCTTGGCTCACTTAAGCCAAGCTGGCTTTGCTCCGTTTGCTGGGCGTCTCTCCCGGTTTCTGAAGTACCACGGTTGGTTGCTGGTGCTCTCCGTCGTCAGTTTAGCCCTGCAGTGTCTTTATTATTCCTTCCTGTGGGGCCCGTGGGCTGTAATACCTGCTCAACTGCTGGCGGGTTTCGCACCGCGCCTCTGGTGGTCCGTAACATCGCAAAGCGAGGACATCGCCACTCCCGGCACCGAAAAGACCATTTTGAGGCTGTTTGAGGTGCTTTCTCTGGAGTTGGGAGCGGCGCTTGGCAGTCTGGCGGCTGGGTTTGTGGTGCAAAGGTTTGGGGTCCAGGTGCTTTTCCAAGGCACGGCGGTCGCTCTGGCTTTGTGGAGCAGCACCCTTGCCGTACTCAAGTGGAAGATTCCTCGGCAGCGCCGGATAAACTACTCACGCCTGCTGGCCGCGGACACCGAGATGAGCGAGTCTGAGTCAGACCAGGAGAAGGACTGGCTTGAGACCGCTATGGAAGACTCCAGAGGGAATAACAAGTGGACGCTGGATAAATCTTAATCAATGGACGCAAAGAGTGACTTCTTAACAGAGGGcgaattaaaaataacactgaaaccGTTCAGTACGCTGAGATTAAGGATTTTCTTACTCTgtatttttgccttgttttccattataaaaaaaagatcaatttaCTTGAGAAGTAATGACATAACCAATGACATAAGTTTGGTTTTTAAGTGTATTATTAGTCAAAATAACTTTGAAGTCGAAATCTACTGATACCTCAATATCTTTGTCGTTACTTCATGAGTTGTTAAGTTGTATATGCTTAAAATAAGACAATCTGTGAGTGGggtgagaaaaataaacacctCAAAGGGAAGTGTTTTTCTTACCCCAGCGACATCATGACTTAATATCTGAAATCGTTTTCGttctcaagtaaatgtatcttgatttcgttttttttttgagatatttgtaattaattctaaacaaaaaatgtaagaaaatattttttttccatcaaaatATCCATCATGGATGACGTTGTATGAGTTTATTACTCTCTCTCGAGTATACTTGAATATCCCAAAATacatcatctgtttttt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34016 lncRNA upstream 145665 23904175 ~ 23906257 (+) True G22921
TU33920 lncRNA upstream 159928 23891597 ~ 23891994 (+) True G22865
TU33918 lncRNA upstream 165316 23886242 ~ 23886606 (+) True G22863
TU33911 lncRNA upstream 180745 23870795 ~ 23871177 (+) True G22857
TU33879 lncRNA upstream 246433 23802176 ~ 23805489 (+) True G22833
XR_006250515.1 lncRNA downstream 25126 24081517 ~ 24083484 (+) True LOC122342062
TU34062 lncRNA downstream 25175 24081566 ~ 24082876 (+) False G22957
TU34065 lncRNA downstream 25175 24081566 ~ 24082800 (+) False G22957
TU34068 lncRNA downstream 25175 24081566 ~ 24082876 (+) False G22957
TU34072 lncRNA downstream 25175 24081566 ~ 24082983 (+) False G22957
XM_043235839.1 mRNA upstream 9 24039902 ~ 24051913 (+) True LOC122342055
XM_043234023.1 mRNA upstream 174248 23873131 ~ 23877674 (+) True mchr1b
XM_043234024.1 mRNA upstream 174248 23873132 ~ 23877674 (+) False mchr1b
XM_043230466.1 mRNA upstream 335346 23709503 ~ 23716576 (+) True c1qtnf6a
XM_043235510.1 mRNA upstream 346484 23696238 ~ 23705438 (+) False il2rb
XM_043235837.1 mRNA downstream 2302 24058693 ~ 24071844 (+) True zgc:171844
XM_043235833.1 mRNA downstream 27595 24083986 ~ 24094610 (+) True tom1
XM_043235834.1 mRNA downstream 82152 24138543 ~ 24142121 (+) True LOC122342047
XM_043235828.1 mRNA downstream 86425 24142816 ~ 24148359 (+) True LOC122342038
XM_043235829.1 mRNA downstream 99965 24156356 ~ 24162242 (+) True LOC122342039
TU34051 other upstream 59 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 59 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 215742 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 643108 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 888206 23158249 ~ 23163716 (+) False prr15la
TU34076 other downstream 38633 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 377664 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 390487 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 473150 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 665135 24721526 ~ 24809963 (+) False G23026

Expression Profile