RNA id: XM_043235848.1


Basic Information

Item Value
RNA id XM_043235848.1
length 2922
RNA type mRNA
GC content 0.47
exon number 19
gene id xab2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9206654 ~ 9212934 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTCGGAAAAGGCGGGGCTTTTGTACTCTGCGTTCCCAACACGTTGGGAAAGTATTTGTTTTGTCAAAGATAACTCtcgagtttttaaaaataaatattgaacgAATTTTCTCCGGCAAAGGAAAATGCCGACGCTTAGCGGAAAGGCAGACGTTTTATTCGAAGATGATGATTTGCCTTACGAAGAGGAAATCATCAGGAATCCGTATTCAGTCAAGTGCTGGATGCGTTACATCGAGCACAAGCAAAATGCTCCGAAAACGATGCTTGATATGATCTATGAAAGAGCTTTAAAAGAGCTGCCCGGCAGTTACAAGCTGTGGTATAACTACCTGCGAGAGAGAAGGAAACAGGTGAAAGGCAAATGTGTCACAGATCCGGCATATGAGGAGGTGAACAACTGCCATGAGAGAGCACTTGTGTTTATGCATAAgATGCCGAGGATATGGATCGACTACTGCCAGTTCATGGTGTCTCAGTGCAAAATTACACGGAGCAGACGGACTTTCGATAGAGCGTTAAGAGCGCTACCCATTACCCAGCATCCTCGCATCTGGCCTCTGTATCTTCGCTTTGCCCGTAACTTGCCTCTCCCAGAAACAGCTATTCGTGTTTACCGCCGCTACTTAAAGTTGTCACCTGAGAATGCAGAGGAATACATTGATTACCTGCGTTCAGTCGGACGTCTTGATGAAGCTGCGATCCGATTGGCGGCTGTGGTCAACGATGAAAACTTTGTTTCTAAAGAGGGAAAGTCCAATTATCAGcTCTGGCACGAGCTCTGTGACCTCATCTCACAAAACCCGGACAAGGTGACTTCACTGAAAGTGGGAGCGATTATCCGAGGAGGTCTCACTCGCTTTACTGACCAGCTTGGCAAGCTCTGGTGTTCTCTGTCTGATTACTACATCCGCAGCGGACACTTTGAGAAgGCTCGAGATGTATACGAGGAAGCCATCTTAACCGTTGTCACTGTACGAGACTTCACCCAGGTTTTCGACAGCTATGCACAGTTTGAGGAGAGCATGATTGCTGCCAAGATGGAGACCACATCTGAACTGGGACAAGATGAAGAGGATGACATTGACTTGGAGTTGCGATTGGCGCGTTTTGAGTTGCTGATAACTAGACGACCGCTTTTGTTAAACAGCGTGCTGCTGCGTCAGAATCCTCACAATGTTCACGAGTGGCACAAGAGAGTCAAGCTCTACGAGGGACAGCCGCGGCAGATCATCAACACGTACACAGAAGCTGTGCAAACCATAGATGCCATGAAAGCCACAGGAAAACCTCACAGTCTCTGGGTGTCCTTCGCCAGATTTTATGAGGATAATGAACAGCTGGATGATGCTCGGACTATCTTCGAGAAGGCCACAAAGGTGAACTACAAACAGGTGGACGATCTCGCTGCAGTGTGGTGTGAATATGGAGAGATGGAGCTGAGACATGAGAATTACGACCAAGCTTTGCGTATACTAAGGaaagcAACAGCGATTCCAGCCAGAAAAGCAGAGTATTTTGATTCATCAGAACCAGTGCAGAATCGAGTGTACAAGTCCCTGAAAGTGTGGTCCATGCTTGCAGACTTAGAAGAGAGTCTTGGGACGTTCCAGTCCACAAAGGCAGTGTACGATCGCATCATTGATCTCCGGATCGCCACTCCTCAGATCATCATTAACTACGCCATGTTTCTTGAAGAACACAACTACTTTGAGGATAGTTTCAAGGCATACGAGCGTGGCATTGCCCTCTTTAAGTGGCCTAATGTTCATGACATCTGGAACACGTACCTTACCAAGTTCATTGACCGTTATGGAGGCAAAAAACTGGAGAGAGCACGAGATCTATTCGAGCAAGCGCTGGATGGATGCCCTGCTAAATATgcaaaaaCTATCTACTTGCTGTATGCTAAGCTGGAGGAGGAGTACGGTCTGGCACGACATGCCATGGCTGTGTATGAGAGAGCCACTGCAGCTGTAGAACCAGAGGAAAGACACCAAATGTTCAACATCTACATCAAACGGGCCGCAGAGATTTACGGAGTCACTCACACAAGAGCCATCTATCAGAAAGCCATCGAGGTCCTGCCGGATGAACACGCCAGAGACATGTGTCTGCGCTTCTCTGACATGGAGAGCAAACTCGGAGAGATCGACAGAGCGAGGGCCATCTACTCGTACTGCTCTCAGATCTGTGATCCGAGGGTGACCGCTCATTTCTGGCAAACGTGGAAGGAGTTTGAGATACGCCACGGTAATGAGGACACCATCCGTGAGATGCTGCGGATTAAACGAAGTGTCCAGGCCACATACAACACGCAAGTCAACTTCATGTCCTCTCAGATGCTCAAGGCAACCACCAATGCTACTGGAACAGTGTCAGATCTTGCTCCTGGGCAGAGCGGAGTGGATGACATGAAGCTGCTGGAGCAGAAGGCTCAACAGCTGGCTGCAGAGGCAGAACAGGACAAACCCAAGCCTAAAGACAAGATCCTTTTCGTCAGGAGTGACACCTCTCGCAGTGAACTTGCCGAACTGGCCAAACAAGCTAACCCAGATGAGATTGACattgatgatgaagatgaggatgcAGAGGATGGGGAACCAGATGAGGTACAATTGGAGCAGAAGTCTGTCCCTACTGCTGTCTTCGGAGGACTAAAGGATGACTGAGTTGGCTCCTTTTTTTACAGATGATCACAAAACACCTGGATTCAGTAATCAGAGAAATGAATAGCAATGTGCTGAATTCATGTGAATGGCTTATTGCACTGCAGCGATACCAGTTCAGACCACATGGTGTCATTCTTTGCAGCGTTTATATGCTTTTCTGTATGTTCATCGTGACATTGGGTGGATAAAATGATCAAGCTCTCGATTGCTTACTCCTCTCTATTGTATATTAAAAGAACAATTAACATG

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12867 SYF1, XAB2; pre-mRNA-splicing factor SYF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27326 lncRNA upstream 21073 9184399 ~ 9185581 (+) True LOC122341719
TU27339 lncRNA upstream 23378 9182540 ~ 9183276 (+) False brd4
TU27303 lncRNA upstream 194476 9011693 ~ 9012178 (+) False pgls
TU27283 lncRNA upstream 218044 8987053 ~ 8988610 (+) False LOC122341292
TU27278 lncRNA upstream 324532 8881198 ~ 8882122 (+) True G18261
TU27353 lncRNA downstream 37165 9250099 ~ 9250630 (+) True G18303
TU27355 lncRNA downstream 49036 9261970 ~ 9262239 (+) True G18305
TU27527 lncRNA downstream 200710 9413644 ~ 9414007 (+) True G18425
TU27532 lncRNA downstream 271501 9484435 ~ 9484736 (+) True G18429
TU27551 lncRNA downstream 328766 9541700 ~ 9543366 (+) True G18443
XM_043235489.1 mRNA upstream 300 9202831 ~ 9206354 (+) True LOC122341842
XM_043235488.1 mRNA upstream 6952 9189136 ~ 9199702 (+) True stxbp2
XM_043235292.1 mRNA upstream 21057 9184485 ~ 9185597 (+) False LOC122341719
XM_043233731.1 mRNA upstream 23364 9153436 ~ 9183290 (+) False brd4
XM_043235689.1 mRNA downstream 1310 9214244 ~ 9245657 (+) True camsap3
XM_043235690.1 mRNA downstream 1310 9214244 ~ 9245657 (+) False camsap3
XM_043235692.1 mRNA downstream 1310 9214244 ~ 9245657 (+) False camsap3
XM_043235694.1 mRNA downstream 1310 9214244 ~ 9245657 (+) False camsap3
XM_043235695.1 mRNA downstream 1310 9214244 ~ 9245657 (+) False camsap3
TU27323 other upstream 20994 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 21073 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 643278 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 481698 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 526862 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 585881 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 812884 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1539825 10752759 ~ 10781853 (+) False kcna7

Expression Profile