RNA id: XM_043235868.1


Basic Information

Item Value
RNA id XM_043235868.1
length 1874
RNA type mRNA
GC content 0.41
exon number 4
gene id ramp2
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14303150 ~ 14309441 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcagttgaaGCCTGACTGGAaaagagtgagagtgagtgagcgagagagagagaaaggcagcCAGAGGTGGAGCGTTATTACGTGGGAAAATTAAAGCGTTCTCGATCAGCAGCTTTCTGAACATCTGGTAACCGTGATTGTATGTGGTGACGGCGCATCACGCTTCCACCCGTCGCGTTTCCTGTTATGCCTCGCGTTCTTCGGTGGAAAAGTTCAGACACTTTCAGCGGCGGGTTGAGAGCAGCTCGCCAGCGCTCGTTTGTTCTGATATGAGGGTATCGTTCGGCTTTTTAGGCGTCTTTCTGTCTGTTATCTGTGgtaTCGGCTATGGAGATGGAGGAACATTTGGCTGTGGTAACAAGAGCATCTGTGACACATACTGTTCATTTTGTATGAACTATTCCTTGATAAGTCAAGAATGCTACGGACTGCTGGTGCAGTTGTGTCAGTATAATTTTGTTGCTGCTATGGACTCCATGAACAGTACTGACTGGTGTTCactggaaaaagtaaaaagtGCATACAACAACTTCACTGTGTGTACTGAGACTGTTGCCGAATGTCTGCTGCTTCCCTGGCCGAATCAGTTGGTTGAACAGATGTTTGTGAACATCCACTCCACCTATTTTCACGATTGCCCCACAGAGGCACTGCGAGACCCCCCTCCCAGCATCATCCTTGCCCTTGTGATGACCCCCATATGCCTAATCCCCGTTATGGTGGTCCTAGTTGTTCTCAAGACTAAGAATGGAGACAGGAGGTCATAGGCGTCCAGGTGCAAGAAGATGTTACTTAGTCATTCTTCTCCTCTATTTTTTCTTCATCCAGTATCCCACCCAGGGATAATGTCCTGGCTCAACGCTCCACAGTCATTGCGCACCTGGGCGTCTCCAGGACTGACTAAACCAGGATGGAGGATGTGCATTTGTTCTGGGGGTGACCTCTGACTGGAAAATGTTACTGTAATTTAGTGGAACATTTGTTGTCTAGAAATGCAAATTTATCATGAACATACAGCTACTGCGCATGACAGATATTTCACAACCAGCATTATTATCTCCAAAGTGCACATATAGGCATCGTTGTCTTCTGGATTTAAATTCATAATCcaatgaaatgtgaaatgtaaagaGATTCGTTTGAAGTATTCACACAAATTGTGTACATGACCAGATGCAGAACCACAAACTCATTTGAGTGTCCATTTTATGCACTGTAAGAAATCTTTAACCCGTGTTTTAATGTAGGTTTTGATGTTAGTTAGGTGACAAGAGCTGTTTAGCTGACTCTGGGAATAATGTCTTCGtgatttcatttctattttgacACAAGTCATAAcgtttgactttttaaatttattatgaAAGCTATTGGGGAATTAAGCATAAACAAATCAATCTGAATGCATGACAAAACAAAGCCGGATGAAAGCCACCAATTTCAATAGGCAGCTTAttaaatatctgtttatttatctaaGTTAATGACATGCGGGTGTCTCTGAAAAGTAAACGTTTAAGAGGAAAGGGGATGAGATTGCAATGTCCACTTACATtgtccatttttaattttactctgCCCCTCACAAAGAACTGCAGCGTACTATGATTACAATATAATTACTGTATCAATGTAGTCACATGAACGAGACTGGCAttactttgtgttttataataacatCAGTAAGCGTTTATGAAGGATGAATCTTACACATGTCTGAATATAGTATCATCTATGCCTGCAGatcgttttctctttttttatagaCCAACCATTTTAAGAGCCTGTgaactattttataattttatacttCACCTCCTACTTTGATTGgacatgtgtttttaatataattaaaccaCACCTTTTACCTAGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29920 lncRNA downstream 81353 14220085 ~ 14221797 (-) True G20095
TU29913 lncRNA downstream 98845 14202931 ~ 14204305 (-) False si:dkeyp-72e1.6
TU29815 lncRNA downstream 242658 14059581 ~ 14060492 (-) True G20029
XR_006250534.1 lncRNA downstream 372873 13917700 ~ 13930277 (-) True LOC122342150
TU29698 lncRNA downstream 404218 13897631 ~ 13898932 (-) True G19947
TU30071 lncRNA upstream 79754 14385361 ~ 14388398 (-) True G20202
TU30083 lncRNA upstream 128098 14433705 ~ 14459554 (-) True G20212
TU30087 lncRNA upstream 141728 14447335 ~ 14457910 (-) False G20212
TU30097 lncRNA upstream 143868 14449475 ~ 14451028 (-) True G20217
TU30125 lncRNA upstream 297587 14603194 ~ 14604214 (-) True G20231
XM_043231322.1 mRNA downstream 10207 14273386 ~ 14292943 (-) False abcc6b.2
XM_043231314.1 mRNA downstream 10207 14273386 ~ 14292943 (-) True abcc6b.2
XM_043234910.1 mRNA downstream 50201 14239107 ~ 14252949 (-) True myh11b
XM_043234911.1 mRNA downstream 50201 14239938 ~ 14252949 (-) False myh11b
XM_043234927.1 mRNA downstream 94919 14206354 ~ 14208231 (-) True mpv17l
XM_043235861.1 mRNA upstream 22599 14328206 ~ 14355988 (-) True cntnap1
XM_043234670.1 mRNA upstream 99367 14404974 ~ 14415597 (-) True tubg1
XM_043235327.1 mRNA upstream 129540 14435147 ~ 14439535 (-) False mlx
XM_043234768.1 mRNA upstream 154215 14459822 ~ 14462247 (-) True LOC122341422
XM_043234750.1 mRNA upstream 156640 14462247 ~ 14556084 (-) False LOC122341419
TU29676 other downstream 497172 13805368 ~ 13805978 (-) True G19933
unassigned_transcript_285 other downstream 1202506 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 1210304 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 1215883 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 1218184 13084026 ~ 13084966 (-) True LOC122341303
TU30091 other upstream 129543 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 130608 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 130608 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 130608 14436215 ~ 14439541 (-) False mlx
TU30272 other upstream 815199 15120806 ~ 15179228 (-) False plcd3a

Expression Profile