RNA id: XM_043235874.1


Basic Information

Item Value
RNA id XM_043235874.1
length 2345
RNA type mRNA
GC content 0.40
exon number 5
gene id clec19a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11408037 ~ 11413269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAACACTCCACACTGTCCTGCAGCACAcatgctcacaaacacacacccacacacacacacacacacacaccagatctcaatcTCCTCTCTTGCACTAAACATGCTTTGTTGGGAATTGTGTTTAGCCGTACTGATCACCGGCTTCCCAGTGTGGGCTCTGCCTTCAACAAACATCAAGATCACACAAGCACTGCCCATGCAACTGTCAGACTCAAACCAGCCTGTGACATGTCCACTCTTCTGGACTGAATTTGAGGGCTACTGTTACCGATTCTTCCCCTTGAACCGCACATGGGCTGAGGCAGATCTGTACTGTGCCGAGTTCTCAAACGGACACAAATCTGCCAAACTCACCTCCATCCACAGCTGGGAGGAAAATGTGTTTGTCTATGATCTTGTGAACAGCCGTGTACCAGGAATTCCAACAGATATTTGGATTGGCCTTCATGATAGAAGACAAGAGGGCACTATGGAGTGGACAGACGGGTCACCCTATGAATACAGTTACTGGGACGGAAATCAACCAGATGATGGCATCCATCGCATCCCTCAGGAAGAGGATTGTGTGGAAATCTGGTACCGACAAAACAGTGCACTAAGGTCTTGGAATGACAACAATTGTGATAAGGCCTTTCCATTCGTCTGTAAGATTCCTACACTGGAAAACTAACCTCAGACCTATGATAGATTATCTAGTTCTTTATCGTCAACACTGACACCCCAACACCACTCAATCACTGCGTAGCAACAAGATGTCTGCTCATCTCCATTTCTGCAGTGATGAAGATCTCTCTTCAGGCACTTCATTTACATTTCTCTCCCCTTCACTCCTTCACAATTCCCTGTCCTCATCGTCCTCCCGTCactgttgtgtatgtgtgtatatatatatgccatagaagaaccatttttgctTTCCTAAATAACCTCTTAGTAACCAGTTCTAAAAAGCAACAGTTGTTTCTGTGgctaacattttaataatctaaatagAATCTTTCGTGGAATGGGAAGATTacataaatgtgaaatgttcgTCATGGAACCACATAATCTAATAAAGAGCTTATTTTTTAGTGTAGATAGTGACCTGCAGCATATAGCTAAACTGAACTAGAATGAAAGCTCAGGTCCCCACCCAGTCATCTGGCAATTATTTCCTTCTTTTCAGATAGGGTATGTTTGCCGGAGCCCTCCAGGATTTTATAAAAAGTCCGAAAATGTCTCttgtttttgatatttgaaGTGCATTTGTAATTTCTTGCAGACAGGAATGCGTGTGTTCATATAATGACTCCTGAGTCTTGATCTGGAACCCCAAACACTGCCAGTGTCCATCTGTGCACATTTATTTGTCACTGACCCAGGAGGTGAGATTCTAAAAGAGAAGGCATTTAAGCCTCTGTTGACTGCAGAGCTTCTAAAGACAGAAAGAGCTTAACCTCATCTAGGCAGATGACCTTTTCTCTCTATGTGTCGTGCTAATTATTAGTGACCCCCTACAAAAACCTCTATTCTCATCCACACAACTGCTAGCAAGGGTCCCAAACCCCCTTTTTCAATACATTACTTTCAATACATACTCTTTTTTCATACATTAGCTAATCTGTAATTTTAAGTATGTTGGATTGGAAGAACAGGAAGGAATTTAATATGGTACACTACAAAAGTAATTGAAACACACTGTCACAAAATAGataagtttaataataatgcaaaataagatAATTGTCACTAATTATGCTTGTTTATTTGGAATATACCTCAATATTTAGAAAACGAATTAGGCTGTTCACAAGATTccattgtttttatgcaaacGTGTTAAATAGATATCTTTTGACTATTGcgcttgtttcttttttgcattgtcTCATGCATggtaaactgctttaaaatgcgGCGATGAAATGAATagttcaacttttaaaaaatgggaAATTAAGTTCATGGACCATAAAAGtaaattcatcaaataaaagttttatacgatttaaaagttttcatttcaaacctctGCTTTAATTGCCTTTCTGGATGGAAATTTCTGGATGAAATATGTCAAGAGGAGGTAAACAAGCTAGTTTTGATGATTATCTGGCTGACCCGCGTGCACAGTGGGGTTAAGATGTTCCCCTGTTGCCGAAGAGAGTAATTAATTGACCCTCTTGTAAACCTCAGAGTAATTATCTCCCTCTTAAAGCCTGCAGAGggaacatttttacacaaacaatcctaaatcttttttttttttggtgatttaATTAGTGCCAGGGTCATCACTGCAATTGCCACACGGTTAAAACAAGTATTTCGAATGATTGATAGAGGGATAGCtcactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28233 lncRNA upstream 27247 11380273 ~ 11380790 (+) True G18946
TU28274 lncRNA upstream 32636 11371502 ~ 11375401 (+) True G18982
TU28231 lncRNA upstream 37056 11271168 ~ 11370981 (+) False G18945
TU28227 lncRNA upstream 37092 11326598 ~ 11370945 (+) False G18945
TU28230 lncRNA upstream 37092 11326598 ~ 11370945 (+) False G18945
TU28487 lncRNA downstream 23675 11436944 ~ 11437197 (+) True G19123
TU28491 lncRNA downstream 27237 11440506 ~ 11441338 (+) True G19126
TU28582 lncRNA downstream 299340 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA downstream 302462 11715731 ~ 11718772 (+) True G19184
XR_006249757.1 lncRNA downstream 421503 11834772 ~ 11835253 (+) True LOC122338225
XM_043228438.1 mRNA upstream 40922 11362983 ~ 11367115 (+) True si:dkey-66i24.8
XM_043228819.1 mRNA upstream 62103 11344269 ~ 11345934 (+) True si:dkey-66i24.7
XM_043228831.1 mRNA upstream 72257 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA upstream 72257 11333742 ~ 11335780 (+) False LOC122331261
XM_043235879.1 mRNA upstream 94668 11308682 ~ 11313369 (+) True prf1.1
XM_043235460.1 mRNA downstream 84384 11497653 ~ 11515159 (+) True LOC122341817
XM_043235659.1 mRNA downstream 178331 11591600 ~ 11594168 (+) True ccdc43
XM_043235982.1 mRNA downstream 190405 11603674 ~ 11606177 (+) True fzd2
XM_043235667.1 mRNA downstream 202926 11616195 ~ 11629282 (+) False mylk5
XM_043235666.1 mRNA downstream 202927 11616196 ~ 11629282 (+) True mylk5
TU28236 other upstream 38285 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 72212 11333759 ~ 11335825 (+) True LOC122331261
XR_006250543.1 other upstream 245594 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 626184 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 626184 10778806 ~ 10781853 (+) False kcna7
XR_006249731.1 other downstream 359932 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 359932 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 359932 11773201 ~ 11833924 (+) False kcnc3a
TU28690 other downstream 679334 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 890095 12303364 ~ 12312990 (+) False nbr1b

Expression Profile