RNA id: XM_043235879.1


Basic Information

Item Value
RNA id XM_043235879.1
length 2231
RNA type mRNA
GC content 0.43
exon number 5
gene id prf1.1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11308682 ~ 11313369 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGCTAGCATTTATTTCCTACACCTAGCCTTATACACATCACTAACCCATGCCTGCTACACAAAACAGAGTAGTTTAAGGAAAGAAGAGCATCCGTACACCTTATCTCCATCCATTTTCCAGGAATGTGGTCCTGGCTTGTTATTTACCTCTTTCTGCCCGTTGTGCAGTCATGCACTAAAGGTAAACCGAATGAATGTGCAGAAGCAAGCTTCGCCCCCGGGTCCAACCTGGCCGGAGAAGGATACGATGTGACAAAGATGCAGCGCAAAGGAGCCTTTGTCATTAACACAGAAGTCTGGAGGCGAAAGGATAAATCATGCACTCTTTGCAAGAACCCCTACATGGATGGAGCGAATCAAAAGCTTCCTACATCTGTAGTAGATTGGAgatcaaataaaaagtgcagCGTTCAATTATCGAGTTCCCTGTATGAGTCCAGTGAAGAACTGGTCAGCTCCAGCGGCTCCTCCATTGAGAACAACTGGGGTGCAAATTTGGACAtaaatgttaaagaaaataGAGGCTCATTCATTCTGGCTGGAACTAACTCAAAGCTCGCAGAGTACTCGATGGAGAAGACCAAAAGAGACAAGTACAATTTTGCCAGTCAAAgtatttcttgttctttttaCAGCTACAGGGTCTCCAGCAGGCCTGTTCTCCATGCCGAGTTCAAACGCTCTGTGAAGGAACTTCCCAAGACATACAATCTTGATTTCAAAAAGCGTTTTTACAAGTTCATTAACACCTACGGAACCCATTACATCACCAAGGTAACTCTTGGTGGAACTGTTCACTCTGTGACCAGTATCAGACAGTGCGAGGTCGCTCTGCAGGGCTTAAGTGCAGATGAAGTGAAGACATGCTTGGACGTGGAGGCCAGTGCCAGCATTCTTGGCAAAGTAGATATGAAAGCAGAAAGTAAGCACTGTAACGAAGACAAGGAAAAAACTGAGAGCAAAAACAGCTTCTCCAGCCGCTTTAATGACAGGCTGACCGAGGTGACTGGAGGTCACACTACAGAGCCTGAGCTCCTTTTCTCAGGAGGAAAAGACCCATCAGCTTACAAAGAATGGATGGAGTCCCTACCACAAAACCCAGACATGATTTCTTACTCTCTGGAGTCCCTGCACGAGCTGATTCCCACCAAAGACCCAGCACGTAAACACTTGCGCCAAGCCATCCATGACTACATCCTGGAGAAGTCCCTCTGGAGAAACTGCACCGACTCTTGCAAAGATGGCATCAAAACCAACCAAAACAACCCGTGTGTCTGCACTTGTCACAACAATCCTGGGATCACACCAAACTGCTGCCCAACAAAGAGTGGACTTTCACGGGTAAAGGTCACAATCGTGAGGGCTCAAAACCTATGGGGTGACCAAACCACAGCGACAGATGGGTACGTTAAAGTGTTCGACAAACATAATATTCTGCGTGGAAGCACTGATATGATCACAAATAACAACTCACCCTACTGGGGGAGAACCTTTGATTTGGGTGATGTCGTCCTGGCGGAGAACGACAAGATTAAACTGGAGGTGTGGGATGAAGATAGTAAATGGGACGACGATTTGCTGGGAACCTGTGAAGTACCCATAAATTCAGGTCACAAAGAGAATTTCTGCAATTTAAATCATGGTCTGCTGTTCTACAAAACAGAAGTGACATGCGCTCCGAGTTTGTCAGGCCCCTACTGCACAAAATATGTTGGTTCCCCCATGAACTTTCACCTGGAGAAGGTATACGCATCACGTAATGCACGACCTGTGCCAGCAGACATACTGATGCGCAAGGGAGTTCTTCTGGACAGACTTTACGTATATCCAAAGACAAATTACACTGCTGAAACTATTCTGTAATCACTTTCGGCTCTGAATCTGTTTATGCAACTATTCGAAATATAACCTCAGCTGTTGTATTAATCACTATcagacatatttaatataaatctttaaTATTTCTCAACTTTAGAGACAATGCgcaatacatatttattatcttttattatctttattgcAGGATTTCTATGCTTGCACTGGcaattttccaaaaacacaaaatatgcaCTGTACTATGTTATGCTCCTTCAGTCTACACTTTGCattattcaaaacaattttcatttattcacaaGTAGAGTCACTAGGACAGCATTTTATTGCATGTGAAaataatctaaaacaaaaaatgtaatgttttgttttaataaacactttaaatggTC

Function

GO: NA

KEGG:

id description
K07818 PRF1; perforin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28247 lncRNA upstream 14077 11289747 ~ 11294605 (+) True G18960
TU28248 lncRNA upstream 14077 11289747 ~ 11294605 (+) False G18960
TU28212 lncRNA upstream 37576 11270202 ~ 11271106 (+) True G18932
XR_006249214.1 lncRNA upstream 115687 11189556 ~ 11192995 (+) True LOC122336311
TU28206 lncRNA upstream 116290 11189939 ~ 11192392 (+) False LOC122336311
TU28227 lncRNA downstream 13229 11326598 ~ 11370945 (+) False G18945
TU28229 lncRNA downstream 13229 11326598 ~ 11352775 (+) True G18945
TU28230 lncRNA downstream 13229 11326598 ~ 11370945 (+) False G18945
TU28274 lncRNA downstream 58133 11371502 ~ 11375401 (+) True G18982
TU28233 lncRNA downstream 66904 11380273 ~ 11380790 (+) True G18946
XM_043235878.1 mRNA upstream 125 11305325 ~ 11308557 (+) True prf1.9
XM_043235291.1 mRNA upstream 26941 11278737 ~ 11281741 (+) True cldni
XM_043231371.1 mRNA upstream 302048 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA upstream 302048 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA upstream 302048 10978149 ~ 11006634 (+) False mybpc2a
XM_043228831.1 mRNA downstream 20372 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA downstream 20373 11333742 ~ 11335780 (+) False LOC122331261
XM_043228819.1 mRNA downstream 30900 11344269 ~ 11345934 (+) True si:dkey-66i24.7
XM_043228438.1 mRNA downstream 49614 11362983 ~ 11367115 (+) True si:dkey-66i24.8
XM_043235874.1 mRNA downstream 94668 11408037 ~ 11413269 (+) True clec19a
XR_006250543.1 other upstream 146239 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 526829 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 526829 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 1274215 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1508927 9798815 ~ 9799755 (+) True hbbe1.3
TU28257 other downstream 20390 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 55524 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 459832 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 459832 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 459832 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile