RNA id: XM_043235884.1


Basic Information

Item Value
RNA id XM_043235884.1
length 3383
RNA type mRNA
GC content 0.48
exon number 12
gene id sept9a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13285376 ~ 13348706 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGTGTGTgtggttctgtgtgtgtgtgtggacaggtAAAGCTGAAGTGTTTATGGGAGTTTAGTTCCAACCGATTTAGTTAGTTTGGCACAAGGACGATTTGAATAGCCTACATACATTTTGATCGTGGCTCATGCGCTTTGCCGAGAGACGGAGGTGAATTCTACACGTCGATCGATCATATTTCAGATGTTGCAATCTCAGATACGGACCTAATAGACTAAAGTCGACATTCTGCAGGATAATAAAGGACCACATGAACATGAAGAAAACGTATTCAGGCATTGCGAGGTCCACCAGCGGCAGGCTGAGGAGGCCAGAGAGAGCCGAGGCAACAAGTCCTACTGGTactggttctggttctgCACTAAAGAGGTCATTTGAAGTGGAGGAGGATACATCCACAAACCCATCCCCTCTTTCACGTAGAACGACCAATCCTCTGCGCTCGTCCACCTCTTCTGCGAGCAGCCGTTTCCACGACATGAGGTCGCTCAACTCCGAGTCCACCTCCAGGCATGCTTCGGAGTCCTCCTCCAACCAGCGCTCTCCAAAGTCCAGCCTGAGGCGCATAGAGTTATTGGGGGGCCGTGTCCCAGAGACTGTGTCGCGCAGGACAGAGATCTCCATCGACATCTCCTCCAAGCAGGTGGACAGCTCACCCAGTCCCGGTATCGCCCGTTTCGGCTTGAAGAGACCAGAGGTCTCGCTCCAGAGTAAAGCCACAGACGGGCCTCTTCACAGAAGGGCTGAGGGTAACAACAGCAGACCCCAGGAACCTCCAACACCCCCTAGGAGAGCTGACCCACCAGTATCTGCGTCCCGGATCCCTGAGCTGTCCCAGAGGCGAGCAGAGCCTCCCAGCCCTCTTGAGATCTCGGCTCCGACTAGACGGGCTGAGATGCACATTAACAGACAGCTGGACACACCGTCTCCTGCAAGGGATTCGGAGAACAGCTTCACCTCCGCAGCCAGCATCACTCCTACCTTCAATGAATACAAAACCCCTCCGTCAGTACATGAAGCCCCCCTAAGGCCTCTGGAGAggtcagaggtcatttCCAGCTACAGCAGCAGTAGCAGCAGCAGTAGCATCATGGCAGAGTCTGTTATACCAGAGATGCCCCCAGCCATGTGCCTGGAGAAACCCAGCGTCGACTTCAGCTATGTGGGCATTGATGCCATCCTGGAGCAGATGAGGAGGAAGGCCATGAAACAGGGCTTTGAGCTCAACATCATGGTAGTGGGTCAGAGTGGTTTGGGGAAATCCACACTGATGAACACGCTCTTCAAGTCTAAGGTGAGCCGCAAGTCTTTCCTGGGCACGGCTGAGGAAAAGATTCCCAAAACCATCGAGATCAAGTCCATCAGTCATGATATAGAGGAGAAAGGAGTTCGAATGAAGCTGACGGTGATAGACACACCAGGGTTTGGTGACCAAATCAACAACGAGAATTGTTGGCAGCCCATAATGAAGTTCATCAATGACCAGTATGAGCAGTACTTGCAGGAAGAGATTAATATTGATAGGAAGAAGAGGATCCCAGACTCACGAGTGCACTGCTGCATATACTTCATACCACCCACAGGACACTGTCTTAGGCCTTTGGATGTGGAGTTCATGAGACGTCTTAGTAAGGTGGTGAACATCGTTCCTGTCATCGCTAAGGCTGACACCCTGACTCTGGAAGAGAGGGACTTCTTCAAAAAGAAAatcaGGGAAGAGCTTCGAGCCAATGGGATTGACGTCTACCCACAGAAAGAGTTCGATGAGGATGCGGAGGACAGAATGATCAATGAGAAAATAAGAGAGATGATTCCTTTCGCAGTAGTAGGAAGTGACCAGGAATATCAGGTCAATGGGAGAAGACTATTGGGAAGGAAAACAAAATGGGGAACCATTGAAGTTGAGAATATTGCCCACTGTGAGTTTGCCTACCTGCGGGACCTGCTCATAAGAACCCACATGCAGAACATTAAAGACATCACCAGCAGCATCCACTACGAGATGTACCGCGTCCGTCGGCTCAACGAGAACAACACTCAGGCCAACGGCCTCGGCGAGCACCACCCGGCCTGCCACGAAATCTAGCTCCCTATCCAAACCACCCCTCCACCCCACATTCCTCACTCCTCTCCAATCCCCAATCCTCTTGTTCCACCCCCTTCCATCAGCCGCGGACTGAGGTGAAGAGGTCCATCTAGAAAAGCACATAATGACTTTACCTCCCAGAAACTCCAGCACAGTGCCCTTAAACCCTCACGCCCACTGCACGGGCACCGGAGGGCTGAAGAGGTCAGAAATACAACCGCTAAAGAGCTACTCCATATACTGCATGCGTTTGACTTGCTCTGCTGATGCTCCAGGTCTGTGTGCAGAGGTTGATTGTGAGGCAGGTTCTGATTGGTCAAGCTGTGCGGACAGCTCTTCACATGCaacttttcttccttttttttttttttttttttttttttttgataggaGATTGCTCGGAAGGCTCCTTTTTACGTGATTTGTTGAATGCTCTCTTAATATTTATGCTTCATTTTGAGCGAGACCGATGAGAAACGAGGATGAGCTGATGTGGCAGCACCATTATAAAACTACAGATTATCTGACGTCTTTCCCTCCAAATGTATACTTCTTGCCTACGGCGTTGTAGAGAACCTGGTGTGCCGATAGTGGTtcctgctgtttgttttatcaCATCTGTGCAAATAATTACAGGAAAACTGACTCATTGGATCCCTGGTaccatataaaaacaataatgattGAAATTACAGCTTTGGGATTTGTGTTGGAATGATTATCTGAATAGTAAACAAAATAGTATTTATGTCGATGAAATGGGATCGTTATGTACTTTATACAGACGATCTTATTTATTGCAGAATGTGACCTGAACTGGAAGGAGAATGGCAGTGGGTTCAATaggtttttaataaatcatttaatgttGTGTATAAACCCGGTACACCGTTTTTATCAGGCAGTATTCAGTGCCATTTATCTTAAACCTTCCAGACCGCCTCATACTCTTCCAGTCATGCCAAATATGTGGAAATGCGCACCATCTTTTGTCAGTTTAAGTGTCTTGTTTTGTCTTAGCCTCGAGGAAAGGGCCTACAGGAGAGGGAACTTAAAGTGCCTTGAAAGCTGCCTGCCACATCTGATGAGGAGCCACTTTTAAGAACGGTGCAATTCCTCAGGCTTTGTTCTTGTCTGCAAGCCCCTTTATAAATGCTCGTCATTGggaaaatatctttgttttgtcCTGTGCTGTATATTCATAGTGATTAAATTTTTGTATTGGTATTCAGAGTAACACAAATAACTTTGATATcctgttattttaaagaaataaagatttaaatgatta

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16938 SEPT3_9_12; septin 3/9/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29406 lncRNA downstream 155768 13125521 ~ 13129608 (-) True G19726
TU29374 lncRNA downstream 194224 13090671 ~ 13091152 (-) True G19703
XR_006248461.1 lncRNA downstream 212548 13072560 ~ 13072828 (-) True LOC122332187
TU29260 lncRNA downstream 382466 12900781 ~ 12902910 (-) True G19672
TU29346 lncRNA downstream 420214 12864310 ~ 12865162 (-) True G19677
TU29519 lncRNA upstream 8873 13357579 ~ 13357789 (-) True G19811
TU29594 lncRNA upstream 284853 13633559 ~ 13633785 (-) True G19872
TU29639 lncRNA upstream 437303 13786009 ~ 13792602 (-) True gng13b
TU29640 lncRNA upstream 437303 13786009 ~ 13792233 (-) False gng13b
TU29698 lncRNA upstream 548925 13897631 ~ 13898932 (-) True G19947
XM_043234946.1 mRNA downstream 58238 13173351 ~ 13227138 (-) True tnrc6c1
XM_043234774.1 mRNA downstream 150738 13130936 ~ 13134638 (-) False yipf2
XM_043234773.1 mRNA downstream 150738 13130936 ~ 13134638 (-) True yipf2
XM_043234627.1 mRNA downstream 173997 13107831 ~ 13111379 (-) True LOC122341259
XM_043229457.1 mRNA downstream 201642 13083209 ~ 13083734 (-) True LOC122332149
XM_043235892.1 mRNA upstream 1272 13349978 ~ 13352450 (-) True LOC122342101
XM_043235893.1 mRNA upstream 5287 13353993 ~ 13358941 (-) True LOC122342102
XM_043235890.1 mRNA upstream 10233 13358939 ~ 13364611 (-) False zgc:163143
XM_043235891.1 mRNA upstream 11776 13360482 ~ 13364611 (-) True zgc:163143
XM_043235106.1 mRNA upstream 50250 13398956 ~ 13411948 (-) False thraa
unassigned_transcript_285 other downstream 184732 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 192530 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 198109 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 200410 13084026 ~ 13084966 (-) True LOC122341303
unassigned_transcript_281 other downstream 204755 13080070 ~ 13080621 (-) True LOC122332138
TU29676 other upstream 456662 13805368 ~ 13805978 (-) True G19933
TU30091 other upstream 1086444 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 1087509 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 1087509 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 1087509 14436215 ~ 14439541 (-) False mlx

Expression Profile