RNA id: XM_043235891.1


Basic Information

Item Value
RNA id XM_043235891.1
length 1593
RNA type mRNA
GC content 0.47
exon number 12
gene id zgc:163143
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13358939 ~ 13364611 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGACACCACAGATGTAGCCGAGCCGCTGGAgctctgttttggttttttggCGTTCAGCGTTCAGTGTGTTTGTTCGTTCGCCAGCGTTATTTTGAAATAGAATACGACGGAGCGATAGCGTTCAATAAACATACCGCTGGTAGATAAGGTGAATGTTGAGCCTCCAGACGCGATGGTGTGTCATTGTTGTGCATataactgtaaaaacactgCGAAGAACAAGAGTCTGTCGTTCCACAAatttccGCTAAAAGACCCCACTTTGCTGAAAAAGTGGCTTAAAAATTTAAGATGGAAAGACTGGAAGCCTGCACCAAACAGTAAAATCTGCTCCGTCCACTTTGAAAATAAGTGTTTTGTTGAAGACGGGAAGAGAACAAGACTTCATTCATGGGCTGTGCCCACCATCTTTTCATTCCCAAATCGATATCTAGAAAGAAAGGTTAAAATCAATCCTAGAAGCAAAAGAGCTTTGGGAATTGTTGCAGAGTCAAATTCACCTGATCAGGCAGCACCTGACGCGACGACAGAAACCTCGCAGAAACCTTACTCAGAAAAACCTGAGCACAGAACTACAGAGAGTTCACAGCCGGACACGTCCGAAAGTAGTTCTAGCCCGACCAGAACAGACCCAAAGCAGCTGATAGAACCGGAAAAAAGCCCACCGTGGACCATCCTGGGTGATGAAACTCTTGACAGAAGCATGACTTTACCCAGTTTCTTCCACAGTGGATACTGTCTGCccaataaCATCCGCTGGGCTGGAGACAATGAATTGAATATTATGCCGCATGTGGCTTATGGAGTTTTAGGACAAACGAAACCCCATATCATTGAGGTTAAAGAGAGGTGGGAATGGCTTGGGCTGGATGTTAGAGGCCCGTTCTCTCCGACAGTAGACCAGCACACGCACATCATGACCCTGATTGACTATCACTCCAAATGGGTGGAAGCTTTCCCTTTGACTCAGGATCTCAGTCAGGATGTGGCCAGGTGCCTCGCTGAAGTCGTCAGTCAGCAGGGATACCCTCTGGGAATTCTCTCCCGGCTCCCCAAGCGCATCCTCATGGAGGTTAACCGTGAATTGAAGAAAAACCTGAGGCTGAATTCAAACGCCTTAGTCATTCATCACCGTCAAACTGGTTACATGGACCTGGTCACCGAGTCGCTTCTTAATGAGATGCTGGACGAGCTGGTGAAGAAGCACGGCAGAATCTGGCACATCCTCCTCCCTGCTGCCACTCTGCGCCTCTGCTGCACCACTCACCCCACGACCAAAGAGAAAGCCTTCACCCGCATGTGTGCCAGTGACCCCCCGTTCTCATCCGCACCCAGAGAGCTGCCTTACAGTGCTACTGATGTTCGCTTGAGCTCTTTTGTCATTCCTGCTGCTGACGCCAACAATCTGGAAACAGGCTCAGAAACTTCGGTGCACTCTCTGAAGGATCAGAGTTTCTCCCAGCAGAGaaactaaattttattttcGTTTTTACTTGACCTCAAAATTTCGCATTCACTTTGCAgtactgtaaaatgttaaaggaatagttcacccaaaatgttatggaatttcttttgttctggcgaacac

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29519 lncRNA downstream 2693 13357579 ~ 13357789 (-) True G19811
TU29406 lncRNA downstream 230874 13125521 ~ 13129608 (-) True G19726
TU29374 lncRNA downstream 269330 13090671 ~ 13091152 (-) True G19703
XR_006248461.1 lncRNA downstream 287654 13072560 ~ 13072828 (-) True LOC122332187
TU29260 lncRNA downstream 457572 12900781 ~ 12902910 (-) True G19672
TU29594 lncRNA upstream 268948 13633559 ~ 13633785 (-) True G19872
TU29639 lncRNA upstream 421398 13786009 ~ 13792602 (-) True gng13b
TU29640 lncRNA upstream 421398 13786009 ~ 13792233 (-) False gng13b
TU29698 lncRNA upstream 533020 13897631 ~ 13898932 (-) True G19947
XR_006250534.1 lncRNA upstream 553089 13917700 ~ 13930277 (-) True LOC122342150
XM_043235893.1 mRNA downstream 1541 13353993 ~ 13358941 (-) True LOC122342102
XM_043235892.1 mRNA downstream 8032 13349978 ~ 13352450 (-) True LOC122342101
XM_043235887.1 mRNA downstream 23220 13285376 ~ 13337262 (-) False sept9a
XM_043235106.1 mRNA upstream 34345 13398956 ~ 13411948 (-) False thraa
XM_043235104.1 mRNA upstream 34345 13398956 ~ 13411948 (-) True thraa
XM_043235107.1 mRNA upstream 34345 13398956 ~ 13408973 (-) False thraa
XM_043235105.1 mRNA upstream 34345 13398956 ~ 13408973 (-) False thraa
XM_043235108.1 mRNA upstream 34345 13398956 ~ 13408293 (-) False thraa
unassigned_transcript_285 other downstream 259838 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 267636 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 273215 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 275516 13084026 ~ 13084966 (-) True LOC122341303
unassigned_transcript_281 other downstream 279861 13080070 ~ 13080621 (-) True LOC122332138
TU29676 other upstream 440757 13805368 ~ 13805978 (-) True G19933
TU30091 other upstream 1070539 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 1071604 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 1071604 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 1071604 14436215 ~ 14439541 (-) False mlx

Expression Profile