RNA id: XM_043235901.1


Basic Information

Item Value
RNA id XM_043235901.1
length 2294
RNA type mRNA
GC content 0.48
exon number 5
gene id cbx2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3409777 ~ 3415087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCGTCGCGCTCCTGCGTATCCGCCCCCTTCTGTTCCGTCCTGCTCCGCGCTCCCTCTCTGGCGCGCACACGCGCGCACGTTTAGTTCGCGGAGAATGAAATGAGAATGAGATGAGAACAGTCATGGAGGAGCTGAGCGCGGTGGGAGAGCAGGTCTTTGACGCCGAGTGTATCCTCAACAAACGCCTGCGGAAGGGCAAGCTGGAGTATCTGGTCAAGTGGAGGGGATGGTCGTCCAAGCATAACAGTTGGGAACCTCAGGAAAACCTTCTTGACCCGAGACTATTGGCTGCGTTTAACAAGAGGGAACAGGAACGGGAACTCTTGATCCGCAATAAGGGTAAACGGCCCCGTGGACGACCCAGAAAAATATTGGACACCATTCCAGTGGTATCCAAATCAAGCAGCTCGTCCTCATCGTCCTCATCTTCTGGTTCATCGTCTTCCTCATCGTCTTCCTCTTCTTCAGATGATGACGACGATGAAGACGACAACGATGACAGGAATCCAAAACCGAGCCCTCGTCCACGAGAGCACCACCCAGTCCCTCAGAAGAAAGCCCAGATTGTGGTTGCCAAACCAGATCTGCCGAAGAAGAAGCGAGGAAGGAAAGCTCTTCCTCCAGAGCTAAAGGCGCAGCGGCAGGTCAAAGGTCCGCGGAAGATGCTCAAGCCCATTTCCAGAGACTCAGAGCTCCGAGGGAGCATAAAGAAACCACTCATGCCTGCAAGCTTCACATACACCGGGTTGAACCGAAATTCTGGAAGAGAGCCGATGACACTGCAGAATAGAGGTTCTTTTACCCAGAAGAACTCTTTAAGTTCCTTAGGGCGCTCTGTCGGATCGACCTCGTCACCTACTACAGTAAGCCGACCACCACAAACCAAAACTGCTTCAGATTTCAAGCTCTCGGTCTCAGATATGAGCAGCGGAGGAGTCGATCCCAAAACACCCTCGTGCAAATCTCCAGGAGTGGCTGCATTGAATCTGCACAGCAGCAATGTACAGACATGTCCACAACTCTCTCCAAATGTCCCGAAGGCCTCGGATCAGACTCTACTTCAAAGATCAGGATCTCTCCAGAAATCCCCAACAAGCTCATTTTCTTCTCTTAAAACTCCTTCCAGCCTTCAAGCTCTCAACCTGCAGAGTGTAAACAAAATGGCGCAGGGTAATGGCACCTCCACAAACGACGGATCGTACTTGAAGGGTACCTCCAACCCCAATAGAAAAAGCTCTGGGTTTAACACAAGGCACGAGCAGAGTCCTGCACCGAATGTCCCAAGTAAGTTCCCGACCGGTCAACAAGTCCTTAAGAGTCCGCAACGAGATAAATCCAAAGCAGACGACTTGTCTGAAAGACTGGGGAAAAAGAATCAAGGTAGAGTGGACAAGATACTCACTCAGACGACAGAGGGACGAGATCAATCAGTGCAAGAGAGAACCTCTTCTAAAGATGCAGGGAAACCGAACAAGACCCTGAGCGAATTGAGCACTGGGGAAGAGGGAAGCAGCTCGGATTCTGACCACGATTCCTCATTTCCGAACAACAACCGTGACTTGGCTATCTCGGTGCAGGCGGGTCAGGACTGGAGGCCGACACGGAACCTGATTGAACACGTGTTTGTCACCGACGTCACTGCAAACCTGGTCACTGTGACGGTGAAGGAGTCACCCACCAGCGTTGGGTTTTTTAGCATCCGCAATTATTGAATGTCGACAACTGCAACTGCAGCCACTCTGTGATAATCAGGAGAAATTCCGAAGAAATCAAAGGAACTTGGTGCTTCTCCAACTTTggattttacttgttttaactCAAAATCTCACTGTTTTAGTTGGTCAGTTTTGAAGTTCTTGAGAAGATGAATACCTGATGACCTGCTCAGTCACAGGTGTTTATTATCTCAGTTATGCATAGATATTAAGCATAAGCATATGTTACAGAACAAATAATTGACTATTTGTCTTGGTTTCCACTTCAGGGACTGTTCCATGTTCTCTTAATGTTGATTCTGAGTACAGTATTAgtaaagaagaaagtcactaGATCGGAGCAAATGTATCCAAAATGTGTTAAGGCTAAATCTCAGATCACATTTTAAGGTGCCTGTTTTTAAAGCTGTCCACTTTCTGCCTGATGACTATTATAACTGAGGGTTTTTTTCCCTTCTAGTATGAATGTTGGCATCTTTTATACTACACAACagctctgtttatttattatttctcacTGGTTTTTGTTGGTAGGTGAAATgctaaaacatacagtaaagatttttttatacaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11451 CBX2; chromobox protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24622 lncRNA upstream 30232 3379281 ~ 3379545 (+) True G16549
TU24590 lncRNA upstream 132797 3276399 ~ 3276980 (+) True G16529
TU24552 lncRNA upstream 707576 2699280 ~ 2702201 (+) True G16492
TU24543 lncRNA upstream 742518 2660875 ~ 2667259 (+) True G16484
TU24310 lncRNA upstream 775397 2631795 ~ 2634380 (+) True G16357
TU24630 lncRNA downstream 110817 3525904 ~ 3526906 (+) False mmd
TU24652 lncRNA downstream 125329 3540416 ~ 3540798 (+) True G16575
TU24655 lncRNA downstream 125870 3540957 ~ 3541640 (+) True G16576
TU24672 lncRNA downstream 153705 3568792 ~ 3569146 (+) True G16589
TU24687 lncRNA downstream 179590 3594677 ~ 3598203 (+) True G16598
XM_043231127.1 mRNA upstream 2647 3401426 ~ 3407130 (+) True LOC122333486
XM_043231103.1 mRNA upstream 129222 3277169 ~ 3280555 (+) True LOC122333469
XM_043235036.1 mRNA upstream 137411 3269593 ~ 3272366 (+) True LOC122341575
XM_043235030.1 mRNA upstream 718515 2685610 ~ 2691262 (+) False LOC122341572
XM_043235058.1 mRNA upstream 750831 2647489 ~ 2658946 (+) True jpt1b
XM_043235951.1 mRNA downstream 71065 3486152 ~ 3490051 (+) True tmem100a
XM_043235399.1 mRNA downstream 94989 3510076 ~ 3526914 (+) False mmd
XM_043235401.1 mRNA downstream 94989 3510076 ~ 3526914 (+) False mmd
XM_043235403.1 mRNA downstream 94989 3510076 ~ 3525401 (+) False mmd
XM_043235407.1 mRNA downstream 94989 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 86723 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 126121 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 763027 2641212 ~ 2646750 (+) False sumo2b
TU24319 other upstream 763027 2641212 ~ 2646750 (+) False sumo2b
TU24296 other upstream 840778 2568084 ~ 2568999 (+) True G16347
XR_006250493.1 other downstream 94989 3510076 ~ 3525401 (+) False mmd
TU24749 other downstream 394121 3809208 ~ 3813303 (+) False LOC122332297
TU24797 other downstream 532536 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 554428 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 941945 4357032 ~ 4359304 (+) False LOC122340527

Expression Profile