Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_006250523.1 |
| length | 1274 |
| RNA type | transcript |
| GC content | 0.47 |
| exon number | 9 |
| gene id | nsmce1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_056701.1 |
| NCBI id | CM032070.1 |
| chromosome length | 30200998 |
| location | 17113048 ~ 17117041 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006310 | DNA recombination | biological_process |
| GO:2001022 | positive regulation of response to DNA damage stimulus | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0000781 | chromosome, telomeric region | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030915 | Smc5-Smc6 complex | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU30906 | lncRNA | upstream | 4458 | 17107992 ~ 17108694 (+) | True | G20803 |
| TU30937 | lncRNA | upstream | 36978 | 17075788 ~ 17076174 (+) | True | G20831 |
| TU30936 | lncRNA | upstream | 37577 | 17075353 ~ 17075575 (+) | True | G20830 |
| TU30935 | lncRNA | upstream | 38328 | 17074622 ~ 17074824 (+) | True | G20829 |
| TU30904 | lncRNA | upstream | 50329 | 17057704 ~ 17062823 (+) | True | G20801 |
| TU31064 | lncRNA | downstream | 386855 | 17503896 ~ 17516429 (+) | True | G20908 |
| TU31072 | lncRNA | downstream | 436333 | 17553374 ~ 17563364 (+) | True | G20915 |
| TU31095 | lncRNA | downstream | 455089 | 17572130 ~ 17572473 (+) | True | G20927 |
| TU31137 | lncRNA | downstream | 533726 | 17650767 ~ 17651301 (+) | True | G20953 |
| TU31133 | lncRNA | downstream | 572374 | 17689415 ~ 17690288 (+) | True | G20951 |
| XM_043235519.1 | mRNA | upstream | 15187 | 17089814 ~ 17097965 (+) | True | LOC122341850 |
| XM_043235518.1 | mRNA | upstream | 15187 | 17089814 ~ 17097965 (+) | False | LOC122341850 |
| XM_043235521.1 | mRNA | upstream | 15187 | 17090642 ~ 17097965 (+) | False | LOC122341850 |
| XM_043235204.1 | mRNA | upstream | 67860 | 17043049 ~ 17045292 (+) | True | litaf |
| XM_043235100.1 | mRNA | upstream | 75665 | 17024634 ~ 17037487 (+) | False | zc3h7a |
| XM_043234677.1 | mRNA | downstream | 20889 | 17137930 ~ 17200630 (+) | True | LOC122341316 |
| XM_043230135.1 | mRNA | downstream | 264742 | 17381783 ~ 17384185 (+) | True | LOC122332748 |
| XM_043230820.1 | mRNA | downstream | 306247 | 17423288 ~ 17449492 (+) | True | hs3st2 |
| XM_043235997.1 | mRNA | downstream | 449222 | 17566263 ~ 17570451 (+) | True | ube2ia |
| XM_043225571.1 | mRNA | downstream | 461699 | 17578740 ~ 17622221 (+) | True | baiap3 |
| unassigned_transcript_287 | other | upstream | 107167 | 17005914 ~ 17005985 (+) | True | trnat-cgu_1 |
| TU30773 | other | upstream | 413670 | 16690703 ~ 16699482 (+) | True | LOC122331507 |
| TU30774 | other | upstream | 413670 | 16690703 ~ 16699482 (+) | False | LOC122331507 |
| TU30775 | other | upstream | 413670 | 16697999 ~ 16699482 (+) | False | LOC122331507 |
| TU30661 | other | upstream | 907984 | 16179910 ~ 16205168 (+) | False | gna12a |
| TU31020 | other | downstream | 46660 | 17163701 ~ 17195884 (+) | False | LOC122341316 |
| TU31132 | other | downstream | 602141 | 17719182 ~ 17723423 (+) | True | G20950 |
| TU31207 | other | downstream | 787563 | 17904604 ~ 17906643 (+) | True | polr3k |
| TU31290 | other | downstream | 957356 | 18074397 ~ 18075574 (+) | False | LOC122341796 |
| TU31277 | other | downstream | 980604 | 18097645 ~ 18101932 (+) | True | si:ch211-157c3.4 |
