RNA id: XM_043235926.1


Basic Information

Item Value
RNA id XM_043235926.1
length 2456
RNA type mRNA
GC content 0.45
exon number 11
gene id pigq
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18495594 ~ 18504038 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCGACGGAATTTCAGTGACGGACCATCAACAAAACGAACGTTATGgAGTGTATCTTTCGGACTTCATAGCACACCATCATGGTGCTGAAGATCTTCTTTCCCCAGTGCTGTAACACTGCCGACAGCGGTCTGCTGGTGGGCCGCTGGATCCCAGGTCACAATTCTGCTGTGGTACTGGCTGTCATTCACTACCCCTTTATACCGGGTCAGGTGAAGAAGTACTTGAGTGAGCTACAGAGCCAGACTCAGGTGGATCTGACCGTCCTGGGCTCCTGGAGCATGCCCAAAGAAGGCCAAGAAGGAATGGACAGCTTCCTAAAAGACCTGAGCACCATATTCCCTCAGAACTGCTGGCTGCAGTTGAGCCGTGAGATTGGCAAAATAGGCTTTACTTGTCAGGTGGTCCAAAGCGACGGCAAACTTCTGCAGGACCAGGAGCAGAAGAACGCCGATGATAAGATCATCCTCATTCATTACGACCAGAGGAAGGTTATGCTGTCCCAGCTTCACCCGGTACAGGACGACGGCCAGAAGTCCGATGTTGAGCCCTCGGAGCTGCGCTTGGTCTTCCAGACAGTTGCTCAAAGTCAGCCTCTCTTTTTCCTGGACAAATATGACGACGGGCCTCTCAAGCTCACACACTGGCAGTCTGAAGGCAGGGAGGCTAGTATTATTGCAGAGCTTTTAAAGCAAGCATCGGTTCCGGTCTGCATCTTCCTCACATGGCTGCTGTCTCTGTGGCACTGGTTGAGCAGTTTCAGGGTTTTACATTTGCGTCCAGTGCTGTTCATCTCAAGCAAGCTGTCCACCTGTGTTCAGTCGGGATACAGAGCAGTTCACTTCAAGACTGTTTTCTCTCCCAAAAAAGCTGCCACACACATGGAATTTATGAGaaaagcaaacatttttgtgTCCTTTCTTGTGGATATAGCCCTTGGTTTGCTGCTCATCTCATGGCTTTATAGGGAAAATCGTATAAGCAAATTAGCAGATACTTTGGTACCTGTGGCTGATCGTGTGGCTAAAGAGCTCCAGGAGCTGTTGGAGTGGCTGATGGGAGCTCCTGCTGGACTGAAGATGAACAGAGCTCTGGACCAGGTTCTGGGGAGATTCTTTCTCTACCACATTCATCTGTGGATCAGTTACATCCACCTGATGTCTCCTTTCATTGAGAGAATCCTGTGGTATGTCGGACTCTCAGCCTGCTTGGGATTGACCTTTGCTCTTTCCATATTGTCCGACATTGTGGCCCTCCTCACTTTCCACATCTACTGTTTTTATGTGTATGGGGCAAGACTCTACTGTCTGAAGATCTACGGTCTGTCCTCGCTGTGGCGGCTCTTCAGGGGGAAGAAATGGAATGTATTGAGGCAGAGGGTTGACTCGTGCTCGTACGACCTGGACCAGTTGTTCATTGGCACGTTGCTCTTTACGATTCTGCTGTTTCTGCTTCCCACCACTGCCCTGTATTACCTCGTCTTTACCCTGCTGCGTCTGGTGGTGGTGCTGTTTCAGGGAGTGATTCATGTTAGTGTGGACTTCATCAACTCCTTCCCCCTGTTTGCCGTCGGCCTTCGTATCTGCAGACCATACAGACTGGCAGAGGGCGTTAAATTTCAGGTGCTTTGTCAGGAGCCGGGAACTCCTCTTCACCTGATGATGGAGATCAACCCATTGAAATGTAGCTCTGTACTTCAGTGTTATCGGACGCCCACTTATAGCTGTTACCCTAAGGATTCCTGGGCCGCATTGTGCAAAAAGCTGTTTGTAGGAGAGCTCATTTACCCCTGGAAGCAGAAGACTGCCAAGACCGACTAACTCTGGGACCTGCAGCCAGACACATGAACATTGACTCCAGTGACACTCCAAATAGTCCTAGAAGTAGATGTTCCTTCGTTGTAGATTTAAATCATGAActtttctttacaaaacattGAGTAGAATCTTCGATTGAAACTgtgattcatttttgtatttattttaaaactttttaagtactttttataACACTGAATAtgtaccattaaaaaaaaaagagtgttacTTATATTGTAGCtttgatatttaaaacttgTCGCTCAATCACAGCCATAATGTAACAAAGATCACTGGACTGGAAGTGTCCCTGTTGACGCCGcctcagttttgttttgttttggggttttttgctGACTCTCACGATGGTCAGATAGAAAGGAAATGACTGATAAAAGTGAGCTATAAAAAGCCTAATCTAGCTGACTAATGTGTCCTGTCTGAATGTTGAATTTAATACAGATTAGTGTAAATTATAATCCACTTGTGTCTGTGTTGCCAAATTGCTGTTTtgtagctattattattattcatgtaaatgatttaattaagtCAAGATTTTTATAACACGATCAAAATATGCATCTGTGCTGTTAAATCTTCAAACTCTAAATGTACCtcaataaagtttatttaata

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 339196 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 378316 18116538 ~ 18119426 (+) True G21073
TU31280 lncRNA upstream 455121 18035539 ~ 18042621 (+) True G21049
XR_006250480.1 lncRNA downstream 70649 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 71975 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 148323 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 198546 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 324648 18828686 ~ 18829253 (+) False LOC122341799
XM_043231462.1 mRNA upstream 10194 18443371 ~ 18487548 (+) False clec16a
XM_043235959.1 mRNA downstream 3117 18507155 ~ 18517671 (+) True rab40c
XM_043235993.1 mRNA downstream 27257 18531295 ~ 18537103 (+) True LOC122342177
XM_043229189.1 mRNA downstream 33695 18537733 ~ 18539127 (+) True hsd17b14
XM_043235936.1 mRNA downstream 40996 18545034 ~ 18550427 (+) True LOC122342138
XM_043235682.1 mRNA downstream 46955 18550993 ~ 18566606 (+) True LOC122341960
XR_006250035.1 other upstream 72666 18405966 ~ 18425076 (+) True nubp1
TU31277 other upstream 395810 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 422168 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 591099 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 774319 17719182 ~ 17723423 (+) True G20950
TU31393 other downstream 2092 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 178316 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 221923 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 221923 18725961 ~ 18729368 (+) False G21182
TU31493 other downstream 229127 18733165 ~ 18733765 (+) True G21183

Expression Profile