RNA id: XM_043235938.1


Basic Information

Item Value
RNA id XM_043235938.1
length 2672
RNA type mRNA
GC content 0.42
exon number 19
gene id flr
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10374102 ~ 10385643 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGGACGGTTGCTAAGAGACAGGATGTCTGCGTCGCGtctctgaaaacacagaagGGCTGCAACTTCAACTCTTCGACTCTtaattttacgtttttatttatggGGTAAAGCTACACGTGGCGTTTGTTTTCGACAATGCCGCTAACAACGATTAAAGACGGCGAATACACGGCTACCGTGTACAAAATGATTAAAGAAGGACGATACGGAGACGCAATTCATATTCTAAGCAAAGAACATCAGAAACAGACGAAATCCAGGGCTGCTCTGTCTCTCCTAGGCTACTGCTACTATCACATGCAGGACTTCACTAATGCAGCAGAATGTTATGAACAGCTGACGCAGCTTCACCCAGAGGTCGAGGACTACAAACTTTACTATGCCCAGTCTCTCTATGGAGCGTGTGCCTTCCCAGAGGCCATGAAAGCTACTTTTCTCTTGGACAGCACAACTAATCATACTAAGATGATTAAACTGCAAGCTGCCATAAAATATGGAGAGGAAGATTTTTCAGGTGCAAAgACTCTGGTTGAGCAGTTGCCTCAGGACGATCCAGACTATGATGTGGATCTCGGGTGTTTGCTTTATAAGGAGGGCGAGTATGAAGAGGCTTGCAAAAAGTTTATGTCCTCCATGAATGTACTGGGCTACCAGCCAGatCTGGCCTACAATATAGCACTTTGTTACTACAGTCTAAAGCAGTATGCTTCAGCGCTCAAATATATTGCAGAAATTATTGAACGTGGAATCAGAGAGCACCCAGAGCTCAGTATTGGAATGACAACAGAAGGCATTGATGTAAGAAGTGTCGGTAACACCCTCGTCCTGCACGAAACTGCTTTGATTGAAGCCTTTAATCTGAAAGCAGCTATTGAATACCAGCTGAAGAACTatgctGCTGCTCAGGAAGCACTGACTGACATGCCACCCAGATCAGAAGAGgaGCTGGATCCAGTCACTCTTCACAACCAGGCTCTAATGAACATGGACACCAAGCCCACAGAGGGTTTTGAGAAACTTGCTTTTCTCCTTCAGCAAAACCCCTTTCCTCCAGTCACTTTTGGCAACTTACTATTGCTTTATTGTAAATATGAGTACTTTGACCTTGCTGCAGATGTCTTGGCTGAAAATGCTCATCTCACTTACAAGTTTCTCACACCGTACCTCTATGAGTTCCTGGATGCCATGATCACATGTCAGACAGCACCTGAGGAAGCATTCCGAAAATTCGACGAAATTGCGGGAAAACTGACTGAACAACTGCGCAAGGTTACAAAACAGGTGCAGGAAGCAAGACACAACCGGGATGATGAATCCCTAAAAAAATATGTCCAAGACTATGACGAGGTTCTTGAGAGgtacaTCCCTGTATTAATGGCCCAGGCCAAAATCTACTGGAACCGTGAGAACTACAGCATGGTGGAAAAGATCTTCCACAAGTCACTGGAGTTCTGTAATGAGCACGACACTTGGAAACTTAATGTTGCTCATGTGCTCTTCATGCAAGACAACAAATATAAAGAGGCCATTGGTTTCTATGAGCCTATCGTTAAGAAGCATTATGAGAATATTCTTAACGTCAGTGCGATTGTCCTTGCTAACCTGTGCGTGTCATACATCATGACCAGCCAAAATGAAGAGGCAGAGGAACTGATGAGAAAGATAGAGAAAGAAGAGGAGCAAATCTCGTATGATGATccagacaaaaaaatctttcatcTGTGTATTGTAAACCTTGTAATAGGGACTTTATATTGTGCTAAAGGGAACTATGACTTCGGCATTTCTCGTGTCATAAAAAGCCTGGAGCCATACAATAAAAAGCTTGGAACAGACACGTGGTTCTACGCTAAAAGATGTTTTCTCTCGCTGCTGGAAAACATGGCCAAGCACATGATCATGCTCAGGGATTCAGTGGTTCAGGAGTGCATTCAGTTCCTCGAGCACTGTGAACTGTACGGAAAAGATGTGCCTGCCATCATAGAACAGCCTCTGGAGGAGGACCGCATGCACATCGGCAAGAACACCGTCACTTATGAATCACGCCTGATAAAAGCTCTCTTCTATGAAGTCACAGGGTGGAATGAGTAACCGTTAAACTATAGCTATATCAGAACTAGATTTTGGGCAAATATTCACCAAAGACCACAATTGCTGATTGCTGTTTTACGTTGATTTCATGGACGGATGGAGGTCTGACTAATAACGCCTCGATGTGGCAGCTTTGGAGAGATCATGCTGTTTCTCGACTAAAtccaaacatgcattttaagcaTGCATTCTCTGTAATAATGAACCCACATGGGTTCACTCCCTCCAGGCAAGAGAgcttaaacttaaataaatattcaccaACAAAGggcattttgttaatttaaactaacctttttattaaaatagtgaAACGTGAACAATTcattatcattaaaattatatactgtGATTACTTTTCAtcagaataataataacgtATCATAATACtgtatggttttttttatttatttgatataaaatatacattttcttggTTTTACCATAAAACATTTGCCTTTCTATTCATTGTCTTGGAATCGTGTACATATCATTAAATCTACAgcactttcattaaaatgatcaaagagGAAAGAATAAATATCTGTAAAGCATGATAAAGAAGGAAACTGAGTTCTG

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0001736 establishment of planar polarity biological_process
GO:0036372 opsin transport biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0031514 motile cilium cellular_component
GO:0005879 axonemal microtubule cellular_component
GO:0005215 transporter activity molecular_function
GO:0070738 tubulin-glycine ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27867 lncRNA upstream 72052 10273974 ~ 10302050 (+) True G18671
TU27728 lncRNA upstream 270641 10034141 ~ 10103461 (+) False G18574
TU27641 lncRNA upstream 430949 9865786 ~ 9943153 (+) True G18517
TU27691 lncRNA upstream 462490 9910957 ~ 9911612 (+) True G18549
TU27627 lncRNA upstream 514929 9854603 ~ 9859173 (+) True G18507
TU27964 lncRNA downstream 186178 10571819 ~ 10579144 (+) True G18744
TU27967 lncRNA downstream 203881 10589522 ~ 10589819 (+) True G18747
TU27977 lncRNA downstream 253448 10639089 ~ 10639293 (+) True G18757
TU27983 lncRNA downstream 277605 10663246 ~ 10664532 (+) True G18763
TU28016 lncRNA downstream 306249 10691890 ~ 10693750 (+) False LOC122333995
XM_043233707.1 mRNA upstream 77701 10242510 ~ 10296401 (+) True sept12
XM_043235302.1 mRNA downstream 4869 10390510 ~ 10394344 (+) True alg1
XM_043235304.1 mRNA downstream 12202 10397843 ~ 10401045 (+) True LOC122341728
XM_043235654.1 mRNA downstream 37105 10422746 ~ 10571227 (+) True cacna1ia
XM_043234873.1 mRNA downstream 210003 10595644 ~ 10607509 (+) True grap2a
XM_043234869.1 mRNA downstream 221995 10607636 ~ 10617581 (+) True fam83fa
TU27725 other upstream 339635 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 574347 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 624222 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 677543 9694632 ~ 9696559 (+) False aanat2
TU27325 other upstream 1188521 9184528 ~ 9185581 (+) False LOC122341719
TU28036 other downstream 367118 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 393165 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 776713 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 948118 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 983252 11368893 ~ 11369752 (+) True G18949

Expression Profile